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Information on SUBCLASS 10.5.1
Subclass Accession number: 6571
Subclass: 10.5.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 38.9 +/- 27.5
Average RMSD (Å) : 0.340 +/- 0.055

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: DhhcpXXXNGpXhX
(φψ)-conformation: bppllpappgppbb
Pattern: [CTV][LV][D][AV]x[DGN][DGNS][DGQ][FITY]x[DN][G][NT]x[IV]x[LMV][DWY]
Conservation:-0.2370.0502.273-0.110-0.964-0.233-0.462-0.704-0.927-0.3520.9142.2730.190-1.1720.722-1.055-0.013-0.195
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1abr_B_251abr   B2542CVDVYDNGYHNGNRIIMWEEEEGGG--STT-BEEEEbxbxpvlxaxpgxxxbxb
1knm_A_1001knm   A100117CLDAVGNGTANGTLIQLYEEEEGGG--STT-BEEEExpbxpvlxaxpvpxbbxb
1m2t_B_2681m2t   B268285TVDVRDDDFHDGNQIQLWEEEEGGG--STT-BEEEEbxbxpllbappgxxxbxb
1qxm_A_2531qxm   A254271VLDVYNSQIANGTHVIVDEEEEGGG--STT-BEEEEbxbxpllxappgpxbbbb
1v6w_A_4061v6w   A406423CLDAVGGGTANGTLIQLYEEEEGGG--STT-BEEEExxbxplUpaxpvxxbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1knm_A_1001knm   A     LATLACTOSE D - 102
1knm_A_1001knm   A     LATLACTOSE A - 103
1knm_A_1001knm   A     LATLACTOSE V - 104
1knm_A_1001knm   A     LATLACTOSE G - 105
1knm_A_1001knm   A     LATLACTOSE N - 106
1knm_A_1001knm   A     LATLACTOSE Q - 115
1knm_A_1001knm   A     LATLACTOSE Y - 117
1m2t_B_2681m2t   B     GOLGLYCEROL D - 270
1m2t_B_2681m2t   B     GOLGLYCEROL V - 271
1m2t_B_2681m2t   B     GOLGLYCEROL R - 272
1m2t_B_2681m2t   B     GOLGLYCEROL D - 273
1m2t_B_2681m2t   B     NAGN-ACETYL-D-GLUCOSAMINE D - 274
1m2t_B_2681m2t   B     GOLGLYCEROL D - 274
1m2t_B_2681m2t   B     NAGN-ACETYL-D-GLUCOSAMINE D - 275
1m2t_B_2681m2t   B     NAGN-ACETYL-D-GLUCOSAMINE F - 276
1m2t_B_2681m2t   B     GOLGLYCEROL Q - 283
1m2t_B_2681m2t   B     GOLGLYCEROL W - 285
1v6w_A_4061v6w   A     XYSXYLOPYRANOSE D - 408
1v6w_A_4061v6w   A     XYSXYLOPYRANOSE A - 409
1v6w_A_4061v6w   A     XYSXYLOPYRANOSE V - 410
1v6w_A_4061v6w   A     XYSXYLOPYRANOSE G - 411
1v6w_A_4061v6w   A     XYSXYLOPYRANOSE G - 412
1v6w_A_4061v6w   A     XYSXYLOPYRANOSE G - 413
1v6w_A_4061v6w   A     XYSXYLOPYRANOSE Q - 421
1v6w_A_4061v6w   A     GCV4-O-METHYL-ALPHA-D-GLUCURONIC ACID Y - 423
1v6w_A_4061v6w   A     XYSXYLOPYRANOSE Y - 423

Clusters included in this Subclass
CLUSTER: HA.9.34