Information on SUBCLASS 10.6.1 |
Subclass Accession number: 6572
Subclass: 10.6.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 60.0 +/- 22.3 Average RMSD (Å) : 0.280 +/- 0.110 Consensus geometry
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Consensus Sequence: | HXHhXXQpXXGhXG |
(φψ)-conformation: | bpabeaaaaagpbb |
Pattern: | [g] | [t] | x | [fw] | [y] | [h] | [gs] | [h] | [fl] | [gs] | [amt] | [q] | [ry] | [cgs] | [adn] | [g] | [lv] | x | [g] | [pst] | [film] | x | [iv] | [dny] |
Conservation: | 1.046 | 0.627 | -0.649 | 0.852 | 1.466 | 1.885 | -0.462 | 1.885 | -0.427 | -0.415 | -0.990 | 0.627 | -0.442 | -0.929 | -0.974 | 1.046 | -0.384 | -1.297 | 1.046 | -0.806 | -0.710 | -1.018 | -0.002 | -0.974 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1aoz_A_99 | 1aoz | A | 99 | 122 | GTFFYHGHLGMQRSAGLYGSLIVD | EEEEEEE-STTTGGGT-EEEEEEE | exbbbbxabeaaaaagxbbxbbbx |
1gw0_A_133 | 1gw0 | A | 133 | 156 | GTSWYHSHFSAQYGNGVVGTIQIN | EEEEEEE-STTGGGTT-EEEEEEE | ebbbbbxaxeaaaaagxbbbbbbx |
1gyc_A_104 | 1gyc | A | 104 | 127 | GTFWYHSHLSTQYCDGLRGPFVVY | EEEEEEE-STTGGGGT-EEEEEEE | ebbbbbpabeaaaaaNxbbwbbbx |
1hfu_A_104 | 1hfu | A | 104 | 127 | GTFWYHSHFGTQYCDGLRGPMVIY | EEEEEEE-STTGGGGT-EEEEEEE | ebbbbbxabeaaaaagxbbxbbbx |
1kya_A_104 | 1kya | A | 104 | 127 | GTFWYHSHLSTQYCDGLRGPFVVY | EEEEEEE-STTTTTTT-EEEEEEE | ebbbbbpabeaaaaagxbbxbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gw0_A_133 | 1gw0 | A | AC4CU BINDING SITE FOR CHAIN A | W - 136 |
1gw0_A_133 | 1gw0 | A | AC1O2 BINDING SITE FOR CHAIN A | H - 138 |
1gw0_A_133 | 1gw0 | A | AC1O2 BINDING SITE FOR CHAIN A | H - 140 |
1hfu_A_104 | 1hfu | A | T3TYPE 3 CU BINDING SITE. | H - 109 |
1hfu_A_104 | 1hfu | A | T3TYPE 3 CU BINDING SITE. | H - 111 |
Clusters included in this Subclass |
CLUSTER: HA.9.29 |