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Information on SUBCLASS 10.6.1
Subclass Accession number: 6572
Subclass: 10.6.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 60.0 +/- 22.3
Average RMSD (Å) : 0.280 +/- 0.110

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: HXHhXXQpXXGhXG
(φψ)-conformation: bpabeaaaaagpbb
Pattern: [g][t]x[fw][y][h][gs][h][fl][gs][amt][q][ry][cgs][adn][g][lv]x[g][pst][film]x[iv][dny]
Conservation:1.0460.627-0.6490.8521.4661.885-0.4621.885-0.427-0.415-0.9900.627-0.442-0.929-0.9741.046-0.384-1.2971.046-0.806-0.710-1.018-0.002-0.974
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoz_A_991aoz   A99122GTFFYHGHLGMQRSAGLYGSLIVDEEEEEEE-STTTGGGT-EEEEEEEexbbbbxabeaaaaagxbbxbbbx
1gw0_A_1331gw0   A133156GTSWYHSHFSAQYGNGVVGTIQINEEEEEEE-STTGGGTT-EEEEEEEebbbbbxaxeaaaaagxbbbbbbx
1gyc_A_1041gyc   A104127GTFWYHSHLSTQYCDGLRGPFVVYEEEEEEE-STTGGGGT-EEEEEEEebbbbbpabeaaaaaNxbbwbbbx
1hfu_A_1041hfu   A104127GTFWYHSHFGTQYCDGLRGPMVIYEEEEEEE-STTGGGGT-EEEEEEEebbbbbxabeaaaaagxbbxbbbx
1kya_A_1041kya   A104127GTFWYHSHLSTQYCDGLRGPFVVYEEEEEEE-STTTTTTT-EEEEEEEebbbbbpabeaaaaagxbbxbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aoz_A_991aoz   A     CUCOPPER (II) ION F - 102
1aoz_A_991aoz   A     C2OCU-O-CU LINKAGE F - 102
1aoz_A_991aoz   A     CUCOPPER (II) ION H - 104
1aoz_A_991aoz   A     C2OCU-O-CU LINKAGE H - 104
1aoz_A_991aoz   A     C1OCU-O LINKAGE H - 104
1aoz_A_991aoz   A     CUCOPPER (II) ION H - 106
1aoz_A_991aoz   A     C2OCU-O-CU LINKAGE H - 106
1aoz_A_991aoz   A     C1OCU-O LINKAGE H - 106
1aoz_A_991aoz   A     CUCOPPER (II) ION R - 111
1aoz_A_991aoz   A     C2OCU-O-CU LINKAGE R - 111
1gw0_A_1331gw0   A     O2OXYGEN MOLECULE W - 136
1gw0_A_1331gw0   A     CUCOPPER (II) ION W - 136
1gw0_A_1331gw0   A     O2OXYGEN MOLECULE H - 138
1gw0_A_1331gw0   A     CUCOPPER (II) ION H - 138
1gw0_A_1331gw0   A     O2OXYGEN MOLECULE S - 139
1gw0_A_1331gw0   A     O2OXYGEN MOLECULE H - 140
1gw0_A_1331gw0   A     CUCOPPER (II) ION H - 140
1gw0_A_1331gw0   A     NAGN-ACETYL-D-GLUCOSAMINE F - 141
1gw0_A_1331gw0   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 144
1gw0_A_1331gw0   A     CUCOPPER (II) ION Y - 145
1gw0_A_1331gw0   A     NAGN-ACETYL-D-GLUCOSAMINE N - 147
1gyc_A_1041gyc   A     CUCOPPER (II) ION W - 107
1gyc_A_1041gyc   A     CUCOPPER (II) ION H - 109
1gyc_A_1041gyc   A     CUCOPPER (II) ION H - 111
1gyc_A_1041gyc   A     CUCOPPER (II) ION Y - 116
1gyc_A_1041gyc   A     NAGN-ACETYL-D-GLUCOSAMINE D - 118
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gw0_A_1331gw0   A AC4CU BINDING SITE FOR CHAIN AW - 136
1gw0_A_1331gw0   A AC1O2 BINDING SITE FOR CHAIN AH - 138
1gw0_A_1331gw0   A AC1O2 BINDING SITE FOR CHAIN AH - 140
1hfu_A_1041hfu   A T3TYPE 3 CU BINDING SITE.H - 109
1hfu_A_1041hfu   A T3TYPE 3 CU BINDING SITE.H - 111

Clusters included in this Subclass
CLUSTER: HA.9.29