Logo
Information on SUBCLASS 4.7.1
Subclass Accession number: 658
Subclass: 4.7.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005515 (>75 %)  
Number of loops: 17

Average sequence ID (%) : 21.5 +/- 20.9
Average RMSD (Å) : 0.547 +/- 0.272

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XpXcpcXh
(φψ)-conformation: bbalagbb
Pattern: xx[dkprt][adgnst][gkn][cdeny][egkr][adgnstv][acfilpvy][dhqstw]x
Conservation:-1.000-1.211-0.2850.0372.1030.5841.110-0.436-0.654-0.796-0.452
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c0a_A_4361c0a   A436446FEDDGEGGLTAEEE-SSS-EEEbbxavavbbbx
1cwv_A_6521cwv   A652661.TDHNDGTYSA.EE-SSSEEEE.bxalagbbbb
1g6o_A_451g6o   A4858ICYNGNKVVWVEEE-SSSEEEEbbbavavbbbb
1hdm_B_1421hdm   B142151.QPNGDWTYQT.EE-SSS-EEE.xxavavbbbb
1i8n_A_381i8n   A3848TITAGNEDCWSEEE-SSSEEEEbbbavavbbbb
1je5_A_961je5   A96106FFDNGDGTTTFEEE-SSSEEEEbbxavavbbbb
1k5n_A_2341k5n   A234243.RPAGDRTFQK.EE-SSS-EEE.bxavagxbbb
1l0q_A_3351l0q   A337346KWDFGDGSSS.EEE-SSS-EE.bxbavavbbb.
1l1d_A_4351l1d   A435445KYDSGCGWPSFEE--SSSS-EExbxavagbpbb
1lml_*_1311lml   -131141HVKDHAGAIVTEEE-SSS-EEEbbxavavbbbx
1n7v_A_3551n7v   A358368YKTDGYGGATCEEE-SSSEEEEbbbavavxbbb
1omh_A_2111omh   A211221LRYGKDGNFDLEEE-SSS-EEEbbxavNgxbbx
1qfh_A_7061qfh   A707717VTDNNDGTYGVEEE-SSSEEEExbxavNvbbxb
1qtr_A_151qtr   A1828WLDTGDGHRIYEEE-SSS-EEEbbxavavbbxx
1uvq_B_1481uvq   B148157.IRNGDWTFQI.EE-SSS-EEE.bxavavbbbb
2apr_*_2412apr   -241250.SDNGDGTYTI.EE-SSS-EEE.bxavavbbbb
3fru_A_2253fru   A228238TGPNGDGSFHAEEE-SSS-EEEbbxagagxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g6o_A_451g6o   A     MSESELENOMETHIONINE I - 45
1g6o_A_451g6o   A     ADPADENOSINE-5'-DIPHOSPHATE I - 45
1g6o_A_451g6o   A     ADPADENOSINE-5'-DIPHOSPHATE T - 46
1g6o_A_451g6o   A     MSESELENOMETHIONINE V - 58
1i8n_A_381i8n   A     ROPPROPIONAMIDE I - 39
1i8n_A_381i8n   A     ROPPROPIONAMIDE T - 40
1i8n_A_381i8n   A     ROPPROPIONAMIDE A - 41
1i8n_A_381i8n   A     ROPPROPIONAMIDE W - 47
1i8n_A_381i8n   A     ROPPROPIONAMIDE K - 49
1k5n_A_2341k5n   A     GOLGLYCEROL F - 241
1l1d_A_4351l1d   A     CACCACODYLATE ION W - 442
1n7v_A_3551n7v   A     ACTACETATE ION A - 356
1n7v_A_3551n7v   A     ACTACETATE ION Y - 358
1omh_A_2111omh   A     MSESELENOMETHIONINE N - 218
1uvq_B_1481uvq   B     GLYGLYCINE R - 149
3fru_A_2253fru   A     NAGN-ACETYL-D-GLUCOSAMINE N - 225
3fru_A_2253fru   A     FUCFUCOSE N - 225
3fru_A_2253fru   A     NAGN-ACETYL-D-GLUCOSAMINE L - 241
3fru_A_2253fru   A     NAGN-ACETYL-D-GLUCOSAMINE L - 242
3fru_A_2253fru   A     NAGN-ACETYL-D-GLUCOSAMINE E - 243
3fru_A_2253fru   A     MANALPHA-D-MANNOSE E - 243
3fru_A_2253fru   A     NAGN-ACETYL-D-GLUCOSAMINE V - 244
3fru_A_2253fru   A     MANALPHA-D-MANNOSE V - 244
3fru_A_2253fru   A     MANALPHA-D-MANNOSE K - 245

Clusters included in this Subclass
CLUSTER: HA.4.40
CLUSTER: HA.4.92
CLUSTER: HA.6.21