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Information on SUBCLASS 12.1.1
Subclass Accession number: 6589
Subclass: 12.1.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 41.6 +/- 26.9
Average RMSD (Å) : 0.340 +/- 0.099

Consensus geometry
d (Å): 1 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hXHXphcpXphppDIh
(φψ)-conformation: bbpaapbaaalplpbb
Pattern: [adeq]x[fhilvy][degnpst][ailv]x[dkqrt][aipvy][FIV]x[HN][EKNPS][dehknqrs][FWY][DNST][adgkqrst]x[nrst][fhilvy][dhnqrs][hnqy][D][IV][AMT][LMV][ILMV][EHKQR][L]
Conservation:-0.176-1.102-0.969-0.967-0.208-1.021-0.402-0.8520.379-1.0431.8520.002-0.7881.6330.518-0.811-1.172-0.366-0.617-0.4350.0472.5471.252-0.1470.7770.5720.1041.392
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a0j_A_811a0j   A81108QFIDSVKVIMHPSYNSRNLDNDIMLIKLEEEEEEEEEE-TT-BTTTTBT--EEEEEbbbxxabbbxpaapbaaalxvxbbbbxx
1cgh_A_811cgh   A81108QHITARRAIRHPQYNQRTIQNDIMLLQLEEEEEEEEEE-TT-BTTTTBS--EEEEEbbbxxabbxxpaapbaaavxlxbbbbxx
1eax_A_811eax   A81108QERRLKRIISHPFFNDFTFDYDIALLELEEEEEEEEEE-TT--TTT-TT--EEEEEbbbxbabbbxpaapbaaavxlxbbbbxx
1ekb_B_811ekb   B81108ETRLIDQIVINPHYNKRRKNNDIAMMHLEEEEEEEEEE-TT-BTTTTBS--EEEEEbbbxxabbbxpaaxbaaalxvxbbxbxx
1eq9_A_791eq9   A79106DVYDVEDAVVNKNYDDFLLRNDVALVHLEEEEEEEEEE-TT-BTTTTB---EEEEExbbxxabbbxpaaxbaaalblxbbbbxx
1euf_A_811euf   A81108QVIPVRRPIPHPDYNDETLANDIMLLKLEEEEEEEEEE-TT--TTT-TT--EEEEEbbbxxabwbxxaapbaaavxlxbbbbxx
1f7z_A_811f7z   A81108QFVNAAKIIKHPNFDRKTLNNDIMLIKLEEEEEEEEEE-TT--TTT-TT--EEEEEbbbxxabbbxpaaxbaaavxvxbbbbxx
1fi8_A_811fi8   A81108QIIPVVKIIPHPAYNSKTISNDIMLLKLEEEEEEEEEE-TT-BTTTTBS--EEEEEbxbxxabxbxxaapbaaavxlxbbbbxx
1fjs_A_811fjs   A81108AVHEVEVVIKHNRFTKETYDFDIAVLRLEEEEEEEEEE-TT-BTTTTBT--EEEEEbbbxxabbbxxaaxbaaavxvxbbbbxx
1gg6_B_811gg6   B81108QKLKIAKVFKNSKYNSLTINNDITLLKLEEEEEEEEEE-TT-BTTTTBS--EEEEEbxbxbabbbxpaapbaaalblxbbbbxx
1h4w_A_811h4w   A81108QFINAVKIIRHPKYNRDTLDNDIMLIKLEEEEEEEEEE-TT-BTTTTBT--EEEEEbbbxxabbbxxaaxbaaavxlxbbbbxx
1hj8_A_811hj8   A81108QFISSSRVIRHPNYSSYNIDNDIMLIKLEEEEEEEEEE-TT-BTTTTBS--EEEEEbbbxxabbbxpaapbaaalxlxbbbbxx
1hj9_A_811hj9   A81108QFISASKSIVHPSYNSNTLNNDIMLIKLEEEEEEEEEE-TT--TTT-TT--EEEEEbbbxxabbbxpaapbaaavxvxbbbbxx
1iau_A_811iau   A81108QFIPVKRPIPHPAYNPKNFSNDIMLLQLEEEEEEEEEE-TT--TTT-TT--EEEEEbxbxxabwbxpaaxbaaaUxvxbbbbxx
1lo6_A_811lo6   A81108EQSSVVRAVIHPDYDAASHDQDIMLLRLEEEEEEEEEE-TT--TTT-TT--EEEEEbbbxbabbbxpaapbaaavxlxbbbbxx
1nn6_A_831nn6   A83110QKLEVIKQFRHPKYNTSTLHHDIMLLKLEEEEEEEEEE-TT--TTT-TT--EEEEEbxbxxabxbxpaaxbaaavxvxbbbbxx
1pyt_D_7811pyt   D781808LYVGVDTIFVHEKWNSFLVRNDIALIKLEEEEEEEEEE-TT-BTTTTBS--EEEEEbbbxbabbxxxaapbaaalbvxbbbxxx
1rtf_B_811rtf   B81108QKFEVEKYIVHKEFDDDTYDNDIALLQLEEEEEEEEEE-TT--TTT-TT--EEEEEbxbxxabbbbpaaxbaaavxvxbbbbbx
1s83_A_811s83   A81108QFINAAKIITHPNFNGNTLDNDIMLIKLEEEEEEEEEE-TT--TTT-TT--EEEEEbbbxxabbbxpaapbaaavxlxbbbbxx
1trn_A_811trn   A81108QFINAAKIIRHPQYDRKTLNNDIMLIKLEEEEEEEEEE-TT--TTT-TT--EEEEEbbbxxabbbxpaaxbaaavxvxbbbbxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cgh_A_811cgh   A     SINSUCCINIC ACID I - 99
1cgh_A_811cgh   A     PPHPHENYLALANINE PHOSPHINIC ACID D - 102
1ekb_B_811ekb   B     CH2METHYLENE GROUP D - 102
1ekb_B_811ekb   B     ZNZINC ION H - 107
1euf_A_811euf   A     NAGN-ACETYL-D-GLUCOSAMINE V - 82
1euf_A_811euf   A     NAGN-ACETYL-D-GLUCOSAMINE P - 84
1fjs_A_811fjs   A     GOLGLYCEROL V - 88
1fjs_A_811fjs   A     GOLGLYCEROL I - 89
1fjs_A_811fjs   A     GOLGLYCEROL K - 90
1fjs_A_811fjs   A     GOLGLYCEROL H - 91
1fjs_A_811fjs   A     GOLGLYCEROL N - 92
1fjs_A_811fjs   A     GOLGLYCEROL R - 93
1fjs_A_811fjs   A     Z34N-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-3,5-DIFLUORO-6-[3-(4,5-DIHYDRO-1-METHYL-1H-IMIDAZOL-2-YL) PHENOXY]PYRIDIN-4-YL]-N-METHYLGLYCINE T - 95
1fjs_A_811fjs   A     Z34N-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-3,5-DIFLUORO-6-[3-(4,5-DIHYDRO-1-METHYL-1H-IMIDAZOL-2-YL) PHENOXY]PYRIDIN-4-YL]-N-METHYLGLYCINE K - 96
1fjs_A_811fjs   A     Z34N-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-3,5-DIFLUORO-6-[3-(4,5-DIHYDRO-1-METHYL-1H-IMIDAZOL-2-YL) PHENOXY]PYRIDIN-4-YL]-N-METHYLGLYCINE E - 97
1fjs_A_811fjs   A     Z34N-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-3,5-DIFLUORO-6-[3-(4,5-DIHYDRO-1-METHYL-1H-IMIDAZOL-2-YL) PHENOXY]PYRIDIN-4-YL]-N-METHYLGLYCINE T - 98
1fjs_A_811fjs   A     Z34N-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-3,5-DIFLUORO-6-[3-(4,5-DIHYDRO-1-METHYL-1H-IMIDAZOL-2-YL) PHENOXY]PYRIDIN-4-YL]-N-METHYLGLYCINE Y - 99
1gg6_B_811gg6   B     APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE K - 82
1gg6_B_811gg6   B     EDO1,2-ETHANEDIOL S - 96
1gg6_B_811gg6   B     EDO1,2-ETHANEDIOL L - 97
1gg6_B_811gg6   B     EDO1,2-ETHANEDIOL T - 98
1gg6_B_811gg6   B     APF1,1,1-TRIFLUORO-3-ACETAMIDO-4-PHENYL BUTAN-2-ONE(N-ACETYL-L-PHENYLALANYL TRIFLUOROMETHYL KETONE) I - 99
1gg6_B_811gg6   B     EDO1,2-ETHANEDIOL I - 99
1h4w_A_811h4w   A     CACALCIUM ION F - 82
1hj8_A_811hj8   A     BAMBENZAMIDINE Q - 81
1hj8_A_811hj8   A     BAMBENZAMIDINE F - 82
1hj9_A_811hj9   A     GOLGLYCEROL Q - 81
1hj9_A_811hj9   A     GOLGLYCEROL F - 82
1hj9_A_811hj9   A     GOLGLYCEROL I - 83
1iau_A_811iau   A     NAGN-ACETYL-D-GLUCOSAMINE F - 82
1iau_A_811iau   A     NAGN-ACETYL-D-GLUCOSAMINE A - 93
1iau_A_811iau   A     NAGN-ACETYL-D-GLUCOSAMINE N - 95
1iau_A_811iau   A     FUCFUCOSE N - 95
1iau_A_811iau   A     FUCFUCOSE K - 97
1iau_A_811iau   A     NAGN-ACETYL-D-GLUCOSAMINE N - 98
1iau_A_811iau   A     FUCFUCOSE N - 98
1iau_A_811iau   A     NAGN-ACETYL-D-GLUCOSAMINE F - 99
1iau_A_811iau   A     NAGN-ACETYL-D-GLUCOSAMINE S - 100
1iau_A_811iau   A     NAGN-ACETYL-D-GLUCOSAMINE N - 101
1lo6_A_811lo6   A     MGMAGNESIUM ION D - 93
1lo6_A_811lo6   A     MGMAGNESIUM ION Y - 94
1lo6_A_811lo6   A     MGMAGNESIUM ION D - 95
1nn6_A_831nn6   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 96
1nn6_A_831nn6   A     NAGN-ACETYL-D-GLUCOSAMINE N - 97
1nn6_A_831nn6   A     NAGN-ACETYL-D-GLUCOSAMINE T - 98
1nn6_A_831nn6   A     NAGN-ACETYL-D-GLUCOSAMINE S - 99
1nn6_A_831nn6   A     NAGN-ACETYL-D-GLUCOSAMINE T - 100
1rtf_B_811rtf   B     PO4PHOSPHATE ION Y - 99
1s83_A_811s83   A     MGMAGNESIUM ION F - 82
1s83_A_811s83   A     4HA4-HYDROXYBUTAN-1-AMINIUM L - 99
1s83_A_811s83   A     4HA4-HYDROXYBUTAN-1-AMINIUM D - 102
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h4w_A_811h4w   A CATCATALYTIC TRIADD - 102
1hj8_A_811hj8   A BM2BAM BINDING SITE FOR RESIDUE A248F - 82

Clusters included in this Subclass
CLUSTER: HA.12.1