ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 12.4.1

Subclass Accession number: 6593
Subclass: 12.4.1

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 3.4 (>75 %)  3.4.21 (>75 %)  3.4.21 (>75 %)  3.4.21.4
GO : GO:0004175 (>75 %)  GO:0004252 (>75 %)  GO:0004252 (>75 %)  GO:0005509 (>75 %)  GO:0008233 (>75 %)  GO:0008236 (>75 %)  GO:0008236 (>75 %)
SCOP : 50493 (>75 %)  50493 (>75 %)  50494 (>75 %)  50494 (>75 %)  50514 (>75 %)  50514 (>75 %)

Number of loops: 7

Average sequence ID (%) : 74.2 +/- 16.1
Average RMSD (Å) : 0.257 +/- 0.113

Consensus geometry

d (Å): 3

delta (°): 45-90

theta (°): 135-180

rho (°): 225-270

Consensus Sequence:	RLGEHNIpVXEGpEQF
(φψ)-conformation:	bblpapaabpagapbb

Pattern:	[EQ]	[V]	[R]	[L]	[G]	[E]	[DH]	[N]	[I]	[ADEKN]	[V]	[ltv]	[E]	[G]	[NST]	[E]	[Q]	[F]	[IV]	[DNS]	[AS]	[ASV]	[KR]	[iv]	[I]	x
Conservation:	-0.006	0.207	0.774	0.207	1.341	0.774	-0.010	1.341	0.207	-1.584	0.207	-1.817	0.774	1.341	-0.784	0.774	0.774	1.341	-0.049	-0.808	-0.639	-1.445	-0.006	-1.306	0.207	-1.819

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a0j_A_64	1a0j	A	64	89	QVRLGEHNIAVNEGTEQFIDSVKVIM	EEEES-SBSSS--S--EEEEEEEEEE	xxbbvxabaabxavaxbbbxxabbbx
1f7z_A_64	1f7z	A	64	89	QVRLGEHNINVLEGNEQFVNAAKIIK	EEEES-SBTTS--S--EEEEEEEEEE	bxbbvxaxaabxagaxbbbxxabbbx
1h4w_A_64	1h4w	A	64	89	QVRLGEHNIKVLEGNEQFINAVKIIR	EEEES-SBTTS--S--EEEEEEEEEE	bxbbvxaxaabxagaxbbbxxabbbx
1hj8_A_64	1hj8	A	64	89	EVRLGEHNIKVTEGSEQFISSSRVIR	EEEES-SBTTS--S--EEEEEEEEEE	xxbbvxabaabxavaxbbbxxabbbx
1hj9_A_64	1hj9	A	64	89	QVRLGEDNINVVEGNEQFISASKSIV	EEEES-SSTTS--S--EEEEEEEEEE	bxbbvxaxaabxagaxbbbxxabbbx
1s83_A_64	1s83	A	64	89	QVRLGEHNIDVLEGNEQFINAAKIIT	EEEES-SBTTS--S--EEEEEEEEEE	bxbbvxaxaabxGNaxbbbxxabbbx
1trn_A_64	1trn	A	64	89	QVRLGEHNIEVLEGNEQFINAAKIIR	EEEES-SBSSS--S--EEEEEEEEEE	xxbbvxaxaabpagaxbbbxxabbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass