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Information on SUBCLASS 13.2.1
Subclass Accession number: 6601
Subclass: 13.2.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005529 (>75 %)  GO:0030145 (>75 %)  GO:0030246 (>75 %)  GO:0046914 (>75 %)  
SCOP : 49898 (>75 %)  49899 (>75 %)  49900 (>75 %)  
Number of loops: 4

Average sequence ID (%) : 69.9 +/- 10.1
Average RMSD (Å) : 0.350 +/- 0.191

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hDTYXNpphcDPXpXHh
(φψ)-conformation: bbabwbaaalppabpbb
Pattern: [FI][V][AG][V][E][FL][D][ST][Y][PS][N][ST][DE][IY][GN][D][P][PS][TY][DPQ][H][IV][G][I][DN][IV]
Conservation:-0.8540.003-0.8540.0030.557-0.8541.111-0.5731.665-0.9141.111-0.670-0.116-1.007-0.5451.1111.665-1.007-1.066-1.3482.219-0.2731.1110.003-0.207-0.273
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1h9w_A_41h9w   A429IVAVELDSYPNTDIGDPSYPHIGIDIEEEEEEE-S--GGGT--SS-EEEEEEbbbbbbxabwbaaavxxabwbbbbbb
1mvq_A_41mvq   A429IVAVELDTYPNTDIGDPSYQHIGINIEEEEEEE-S--GGGT--SS-EEEEEEbbbbbbbabwbaaavxxabxbbbbbb
1nls_*_41nls   -429IVAVELDTYPNTDIGDPSYPHIGIDIEEEEEEE-S--GGGT--SS-EEEEEEbbbbbbxabwbaaavxxabwbbbbbb
1v6i_A_1141v6i   A117142FVGVEFDTYSNSEYNDPPTDHVGIDVEEEEEEE-S--GGGT--SS-EEEEEEbbbbbbxabxxaaalxxabpbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h9w_A_41h9w   A     MNMANGANESE (II) ION E - 8
1h9w_A_41h9w   A     CACALCIUM ION E - 8
1h9w_A_41h9w   A     MNMANGANESE (II) ION D - 10
1h9w_A_41h9w   A     CACALCIUM ION D - 10
1h9w_A_41h9w   A     CACALCIUM ION S - 11
1h9w_A_41h9w   A     MNMANGANESE (II) ION Y - 12
1h9w_A_41h9w   A     CACALCIUM ION Y - 12
1h9w_A_41h9w   A     CACALCIUM ION P - 13
1h9w_A_41h9w   A     CACALCIUM ION N - 14
1h9w_A_41h9w   A     CACALCIUM ION I - 17
1h9w_A_41h9w   A     MNMANGANESE (II) ION D - 19
1h9w_A_41h9w   A     CACALCIUM ION D - 19
1h9w_A_41h9w   A     MNMANGANESE (II) ION P - 20
1h9w_A_41h9w   A     MNMANGANESE (II) ION H - 24
1h9w_A_41h9w   A     CACALCIUM ION H - 24
1h9w_A_41h9w   A     MNMANGANESE (II) ION D - 28
1mvq_A_41mvq   A     CACALCIUM ION T - 11
1mvq_A_41mvq   A     MMAO1-METHYL-MANNOSE Y - 12
1mvq_A_41mvq   A     MMAO1-METHYL-MANNOSE N - 14
1mvq_A_41mvq   A     MNMANGANESE (II) ION N - 28
1nls_*_41nls   *     MNMANGANESE (II) ION I - 17
1v6i_A_1141v6i   A     CACALCIUM ION E - 121
1v6i_A_1141v6i   A     MNMANGANESE (II) ION E - 121
1v6i_A_1141v6i   A     CACALCIUM ION D - 123
1v6i_A_1141v6i   A     MNMANGANESE (II) ION D - 123
1v6i_A_1141v6i   A     CACALCIUM ION T - 124
1v6i_A_1141v6i   A     GALD-GALACTOSE Y - 125
1v6i_A_1141v6i   A     GLCGLUCOSE Y - 125
1v6i_A_1141v6i   A     CACALCIUM ION Y - 125
1v6i_A_1141v6i   A     MNMANGANESE (II) ION Y - 125
1v6i_A_1141v6i   A     CACALCIUM ION S - 126
1v6i_A_1141v6i   A     GALD-GALACTOSE N - 127
1v6i_A_1141v6i   A     CACALCIUM ION N - 127
1v6i_A_1141v6i   A     GALD-GALACTOSE E - 129
1v6i_A_1141v6i   A     CACALCIUM ION Y - 130
1v6i_A_1141v6i   A     MNMANGANESE (II) ION Y - 130
1v6i_A_1141v6i   A     CACALCIUM ION D - 132
1v6i_A_1141v6i   A     MNMANGANESE (II) ION D - 132
1v6i_A_1141v6i   A     MNMANGANESE (II) ION P - 133
1v6i_A_1141v6i   A     CACALCIUM ION H - 137
1v6i_A_1141v6i   A     MNMANGANESE (II) ION H - 137
1v6i_A_1141v6i   A     MNMANGANESE (II) ION D - 141

Clusters included in this Subclass
CLUSTER: HA.12.22
CLUSTER: HA.14.8