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Information on SUBCLASS 4.9.1
Subclass Accession number: 663
Subclass: 4.9.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 16.7 +/- 17.7
Average RMSD (Å) : 0.680 +/- 0.356

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXcGXpX
(φψ)-conformation: bpaalabb
Pattern: [DKST][CKTV]xx[astv][DKN][DG]x[klt]x[kl][DKST]
Conservation:0.184-0.392-1.003-0.733-0.2801.4322.466-0.229-0.686-0.646-0.2960.184
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b9m_A_1461b9m   A148159DVLLADGKTRLKEEEETTS--EEEbbbxaavaxxbb
1ijq_A_4761ijq   A478489SVADTKGVKRKTEEEETTSSSEEEbbbxaavabbbx
1ijq_A_5201ijq   A522533KKGGLNGVDIYSEEEETTS--EEEbbbxaavaxbbx
1qex_A_1991qex   A205216TCQSVDGRKIKTEEEETTSS-EEEbbbxaavabbbb
1usp_A_181usp   A1829TTRSSDDRLNLDEEEETTSS-EEEbbbxaavabbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b9m_A_1461b9m   A     NINICKEL (II) ION H - 146
1b9m_A_1461b9m   A     NINICKEL (II) ION V - 147
1b9m_A_1461b9m   A     NINICKEL (II) ION D - 148
1b9m_A_1461b9m   A     NINICKEL (II) ION R - 157
1b9m_A_1461b9m   A     NINICKEL (II) ION K - 159
1qex_A_1991qex   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID I - 219
1qex_A_1991qex   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID L - 222
1usp_A_181usp   A     GOLGLYCEROL T - 18
1usp_A_181usp   A     GOLGLYCEROL L - 28
1usp_A_181usp   A     GOLGLYCEROL D - 29
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1usp_A_181usp   A AC2GOL BINDING SITE FOR CHAIN AD - 29

Clusters included in this Subclass
CLUSTER: HA.4.98
CLUSTER: HA.5.94