Information on SUBCLASS 4.9.1 |
Subclass Accession number: 663
Subclass: 4.9.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 16.7 +/- 17.7 Average RMSD (Å) : 0.680 +/- 0.356 Consensus geometry
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Consensus Sequence: | XXXcGXpX |
(φψ)-conformation: | bpaalabb |
Pattern: | [DKST] | [CKTV] | x | x | [astv] | [DKN] | [DG] | x | [klt] | x | [kl] | [DKST] |
Conservation: | 0.184 | -0.392 | -1.003 | -0.733 | -0.280 | 1.432 | 2.466 | -0.229 | -0.686 | -0.646 | -0.296 | 0.184 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b9m_A_146 | 1b9m | A | 148 | 159 | DVLLADGKTRLK | EEEETTS--EEE | bbbxaavaxxbb |
1ijq_A_476 | 1ijq | A | 478 | 489 | SVADTKGVKRKT | EEEETTSSSEEE | bbbxaavabbbx |
1ijq_A_520 | 1ijq | A | 522 | 533 | KKGGLNGVDIYS | EEEETTS--EEE | bbbxaavaxbbx |
1qex_A_199 | 1qex | A | 205 | 216 | TCQSVDGRKIKT | EEEETTSS-EEE | bbbxaavabbbb |
1usp_A_18 | 1usp | A | 18 | 29 | TTRSSDDRLNLD | EEEETTSS-EEE | bbbxaavabbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1b9m_A_146 | 1b9m | A | NINICKEL (II) ION | H - 146 |
1b9m_A_146 | 1b9m | A | NINICKEL (II) ION | V - 147 |
1b9m_A_146 | 1b9m | A | NINICKEL (II) ION | D - 148 |
1b9m_A_146 | 1b9m | A | NINICKEL (II) ION | R - 157 |
1b9m_A_146 | 1b9m | A | NINICKEL (II) ION | K - 159 |
1qex_A_199 | 1qex | A | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | I - 219 |
1qex_A_199 | 1qex | A | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | L - 222 |
1usp_A_18 | 1usp | A | GOLGLYCEROL | T - 18 |
1usp_A_18 | 1usp | A | GOLGLYCEROL | L - 28 |
1usp_A_18 | 1usp | A | GOLGLYCEROL | D - 29 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1usp_A_18 | 1usp | A | AC2GOL BINDING SITE FOR CHAIN A | D - 29 |
Clusters included in this Subclass |
CLUSTER: HA.4.98 |
CLUSTER: HA.5.94 |