ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.1.3

Subclass Accession number: 6685
Subclass: 3.1.3

PSSM

Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 17.6 +/- 18.2
Average RMSD (Å) : 0.633 +/- 0.158

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	hphGpXh
(φψ)-conformation:	bbpgpbb

Pattern:	x	x	x	[ilmvw]	[EKPQ]	x	[GN]	[adqt]	[ilmtv]	[acfilvw]	x	[fimvw]
Conservation:	-1.000	-1.000	-0.818	0.014	0.735	0.111	2.497	-0.470	-0.220	-0.837	-0.682	-0.330

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ciu_*_508	1ciu	-	508	517	..MTKAGQTITI	..EE-TT-EEEE	..bbbpvxbbbx
1ds1_A_260	1ds1	A	261	272	AVYLEPGDLLIV	EE---TT-EEEE	bbxxbpvxbxbx
1e0t_A_83	1e0t	A	83	93	.VSLKAGQTFTF	.EEE-TT-EEEE	.xbxxpUxxbbx
1fi2_A_128	1fi2	A	128	139	TFVIPRGLMHFQ	EEEE-TT--EEE	bbbbppvxxbbb
1gtt_A_182	1gtt	A	182	191	..EIQPGDRVRV	..EE-TT-EEEE	..xbbpvxbbbb
1gy9_A_235	1gy9	A	237	248	RWRWQPNDIAIW	EE---TT-EEEE	bbbxbpvxbbbb
1itw_A_444	1itw	A	447	458	EQSVEAGDIWRM	EEEE-TT-EEEE	bbxbbpvxbbbb
1pkl_A_98	1pkl	A	98	109	DAVMERGATCYV	EEEE-TT-EEEE	bbxxbpgpxbbx
1qxr_A_117	1qxr	A	119	130	WISMEPGTVVYV	EEEE-TT-EEEE	bbxbbpgxbbxx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ds1_A_260	1ds1	A	AKG2-OXYGLUTARIC ACID	L - 264
1fi2_A_128	1fi2	A	MNMANGANESE (II) ION	I - 131
1fi2_A_128	1fi2	A	MNMANGANESE (II) ION	H - 137
1fi2_A_128	1fi2	A	MNMANGANESE (II) ION	Q - 139
1gy9_A_235	1gy9	A	AKG2-OXYGLUTARIC ACID	W - 240
1gy9_A_235	1gy9	A	FEFE (III) ION	W - 248
1gy9_A_235	1gy9	A	AKG2-OXYGLUTARIC ACID	W - 248

Clusters included in this Subclass

CLUSTER: AR.4.22

CLUSTER: AR.5.44