Logo
Information on SUBCLASS 1.1.6
Subclass Accession number: 67
Subclass: 1.1.6 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 40

Average sequence ID (%) : 12.4 +/- 14.4
Average RMSD (Å) : 0.530 +/- 0.180

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: pXchX
(φψ)-conformation: aalbb
Pattern: x[adeknqrst]x[acfiltv]x[adegkqrs]x[dgknqrs]xx[agilmptv]x
Conservation:-0.794-0.180-0.8230.361-0.1560.416-0.4702.661-0.562-0.7800.326-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ako_*_441ako   -4455LEEVAKLGYNVFHHHHHHTT-EEEaaaaaaavbxbb
1bs0_A_1871bs0   A191202QQVTQQHNGWLMHHHHHHTT-EEEaaaaaaavxbbb
1byf_A_141byf   A1828GTYCQSRGMAL.HHHHHTTT-EE.aaaaaaavbbp.
1byk_A_751byk   A8596LPAFYEQGYDPIHHHHHHHT-EEEaaaaaaavbxxb
1c3c_A_1921c3c   A196206EKALSYLGLKP.HHHHHHTT-EE.aaaaaaavbbx.
1d3v_A_701d3v   A8495VAETQKNGTISVHHHHHHTT-EEEaaaaaaavbxxb
1dv8_A_1741dv8   A178188DNYCRLEDAHL.HHHHHHTT-EE.aaaaaaavbbp.
1e87_A_1061e87   A110120QNACSEHGATL.HHHHHHTT-EE.aaaaaaavbbp.
1fo6_A_2121fo6   A221232QAGSYQNGAWSAHHHHHHTT-EEEaaaaaaalbxbb
1fw9_A_351fw9   A3546TKRFEQQGKTVSHHHHHTTT--EEaaaaaaavbxxb
1gde_A_1241gde   A125136APAVILAGGKPVHHHHHHHT-EEEaaaaaaagbbwb
1hq8_A_1361hq8   A140150QASCLSQNSSL.HHHHHTTT-EE.aaaaaaalbbx.
1hsj_A_1331hsj   A136147DKELKAKGKSALHHHHTTTT-EEEaaaaaaavbbab
1ibj_A_2361ibj   A240251SEMAHAQGALVLHHHHHTTT-EEEaaaaaaavbxbb
1j18_A_3131j18   A317328LDAFKSAKLDVTHHHHHHTT-EEEaaaaaaalbxbb
1jkm_A_1371jkm   A143154CTDLAAAGSVVVHHHHHHTT-EEEaaaaaaagbxbb
1jva_A_5161jva   A523534TEYAEKLNLCAEHHHHHHTT-EEEaaaaaaalbbxx
1k9j_A_2891k9j   A293303VTACQEVRAQL.HHHHHHTT-EE.aaaaaaalbbp.
1kp6_A_581kp6   A6273YSHCSSLNNNMSHHHHHHTT-EEEaaaaaaavbxbb
1kyf_A_8621kyf   A866877KAKIIGFGSALLHHHHHHHTSEEEaaaaaaagxxbb
1l7a_A_991l7a   A102113MVNWALHGYATFHHHHHHTT-EEEaaaaaaagbxbb
1lla_*_2661lla   -276286ILDSIHLGYVI.HHHHHHHTEEE.aaaaaaavbbb.
1m7x_A_3151m7x   A322333IDAAHAAGLNVIHHHHHHTT-EEEaaaaaaavbxbb
1n71_A_1441n71   A144155YEFYEKLGYKIVHHHHHHTT-EEEaaaaaaavxbxa
1nm2_A_1451nm2   A149160VAHLERLGLTPAHHHHHHTT-EEEaaaaaaagxbxa
1nxu_A_1211nxu   A124135GWQAAEKGYIGIHHHHHHTT-EEEaaaaaaavxxbb
1pfk_A_1391pfk   A154165RDTSSSHQRISVHHHHHHHT-EEEaaaaaaalbbbb
1pwb_A_2541pwb   A258268QLLCTQAGGQL.HHHHHHTTSEE.aaaaaaavbbx.
1qo3_C_1601qo3   C164174KQTCQSSSLSL.HHHHHHTT-EE.aaaaaaavbbp.
1qxy_A_1441qxy   A151161HNTARQNDLKV.HHHHHHTT-EE.aaaaaaavbbb.
1qz3_A_941qz3   A98109RVLAKDGRAVVFHHHHHHHTSEEEaaaaaaalbxbb
1riq_A_3941riq   A398408DEIAREKGLGI.HHHHHTTT-EE.aaaaaaavxbb.
1sx5_A_371sx5   A5364NKIAEKHGYIVEHHHHHHTT-EEEaaaaaaavxxbb
1tn3_*_701tn3   -7484SEDCISRGGTL.HHHHHHTT-EE.aaaaaaavbbx.
1urs_A_401urs   A5162AQWAKAHGDKVIHHHHHHH--EEEaaaaaaagxxbb
1vk3_A_2411vk3   A247258SELVAKGNLGAIHHHHHHTT-EEEaaaaaaalbbbb
1vk3_A_4151vk3   A427437VRKTLSVGAEP.HHHHHHTT-EE.aaaaaaavxxp.
1xgs_A_1291xgs   A136146ENEIRKRGFKP.HHHHHTTT-EE.aaaaaaavbbx.
1xgs_A_301xgs   A3848EKMIMELGGKP.HHHHHHTT-EE.aaaaaaagbbx.
3mbp_*_1323mbp   -136147DKELKAKGKSALHHHHHTTT-EEEaaaaaaavbbab
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1byk_A_751byk   A     T6PTREHALOSE-6-PHOSPHATE L - 75
1byk_A_751byk   A     T6PTREHALOSE-6-PHOSPHATE S - 76
1byk_A_751byk   A     T6PTREHALOSE-6-PHOSPHATE E - 77
1dv8_A_1741dv8   A     CACALCIUM ION H - 187
1e87_A_1061e87   A     GOLGLYCEROL W - 106
1e87_A_1061e87   A     GOLGLYCEROL T - 107
1e87_A_1061e87   A     GOLGLYCEROL S - 108
1e87_A_1061e87   A     GOLGLYCEROL N - 111
1e87_A_1061e87   A     ZNZINC ION E - 115
1e87_A_1061e87   A     ZNZINC ION H - 116
1fw9_A_351fw9   A     PHBP-HYDROXYBENZOIC ACID T - 35
1fw9_A_351fw9   A     PHBP-HYDROXYBENZOIC ACID F - 38
1fw9_A_351fw9   A     PHBP-HYDROXYBENZOIC ACID V - 47
1gde_A_1241gde   A     PLPPYRIDOXAL-5'-PHOSPHATE Y - 124
1ibj_A_2361ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 253
1n71_A_1441n71   A     COACOENZYME A Y - 144
1n71_A_1441n71   A     COACOENZYME A E - 145
1n71_A_1441n71   A     COACOENZYME A F - 146
1n71_A_1441n71   A     COACOENZYME A Y - 147
1n71_A_1441n71   A     COACOENZYME A K - 149
1n71_A_1441n71   A     COACOENZYME A L - 150
1nxu_A_1211nxu   A     MSESELENOMETHIONINE G - 121
1nxu_A_1211nxu   A     MSESELENOMETHIONINE S - 122
1nxu_A_1211nxu   A     MSESELENOMETHIONINE Y - 123
1nxu_A_1211nxu   A     MSESELENOMETHIONINE G - 124
1nxu_A_1211nxu   A     MSESELENOMETHIONINE W - 125
1nxu_A_1211nxu   A     MSESELENOMETHIONINE Q - 126
1nxu_A_1211nxu   A     MSESELENOMETHIONINE A - 127
1nxu_A_1211nxu   A     MSESELENOMETHIONINE I - 133
1nxu_A_1211nxu   A     MSESELENOMETHIONINE G - 134
1nxu_A_1211nxu   A     MSESELENOMETHIONINE I - 135
1nxu_A_1211nxu   A     MSESELENOMETHIONINE C - 136
1pfk_A_1391pfk   A     ADPADENOSINE-5'-DIPHOSPHATE R - 154
1pfk_A_1391pfk   A     MGMAGNESIUM ION R - 154
1pfk_A_1391pfk   A     ADPADENOSINE-5'-DIPHOSPHATE S - 158
1qxy_A_1441qxy   A     ACTACETATE ION H - 151
1qxy_A_1441qxy   A     ACTACETATE ION A - 154
1qxy_A_1441qxy   A     ACTACETATE ION L - 159
1qxy_A_1441qxy   A     ACTACETATE ION K - 160
1qxy_A_1441qxy   A     ACTACETATE ION V - 161
1riq_A_3941riq   A     MSESELENOMETHIONINE I - 400
1sx5_A_371sx5   A     MNMANGANESE (II) ION E - 45
1vk3_A_2411vk3   A     MSESELENOMETHIONINE L - 243
1vk3_A_2411vk3   A     MSESELENOMETHIONINE S - 244
1vk3_A_2411vk3   A     MSESELENOMETHIONINE S - 247
1vk3_A_2411vk3   A     MSESELENOMETHIONINE E - 248
1vk3_A_2411vk3   A     MSESELENOMETHIONINE I - 258
1vk3_A_2411vk3   A     MSESELENOMETHIONINE V - 259
1vk3_A_4151vk3   A     MSESELENOMETHIONINE T - 415
1vk3_A_4151vk3   A     MSESELENOMETHIONINE Y - 416
1vk3_A_4151vk3   A     MSESELENOMETHIONINE T - 419
1vk3_A_4151vk3   A     MSESELENOMETHIONINE V - 423
1vk3_A_4151vk3   A     MSESELENOMETHIONINE S - 426
1vk3_A_4151vk3   A     MSESELENOMETHIONINE V - 427
1vk3_A_4151vk3   A     MSESELENOMETHIONINE R - 428
1vk3_A_4151vk3   A     MSESELENOMETHIONINE T - 430
1vk3_A_4151vk3   A     MSESELENOMETHIONINE P - 437

Clusters included in this Subclass
CLUSTER: HE.2.7
CLUSTER: HE.3.11
CLUSTER: HE.4.138
CLUSTER: HE.4.145