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PDB code:

Information on SUBCLASS 3.4.1

Subclass Accession number: 6707 Subclass: 3.4.1 Type: AR beta-beta link DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 15 Average sequence ID (%) : 11.7 +/- 15.0 Average RMSD (Å) : 0.567 +/- 0.176 Consensus geometry d (Å): 7 delta (°): 0-45 theta (°): 90-135 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1amu_A_350	1amu	A	350	357	APIQNTQI	EE-TTEEE	bpxpvbbb
1cb8_A_502	1cb8	A	503	510	KTGRGKIT	EE-TT-EE	bxxxvbbb
1cb8_A_509	1cb8	A	513	520	KAQGQFWL	EE-TTEEE	xxxpvxbb
1f3l_A_479	1f3l	A	489	496	PVKAGEAL	EE-TT-EE	wbbpvxbb
1g38_A_356	1g38	A	359	366	LPKEGVRL	EE-TTEEE	bxxpvxbb
1hv9_A_273	1hv9	A	273	280	EIDTNVII	EE-TTEEE	bbxxlxbb
1hv9_A_278	1hv9	A	285	292	TLGHRVKI	EE-TT-EE	bbxxlxbb
1kgq_A_139	1kgq	A	139	146	MVDTWATV	EE-TTEEE	bbxpvxbb
1lci_*_364	1lci	-	364	371	KVVPFFEA	EE-TT-EE	bxxpvbbb
1ocx_A_74	1ocx	A	75	82	FLGNNFFA	EE-SSEEE	bbxplxbb
1pkh_A_133	1pkh	A	133	140	WIDAGFKG	EE-TT-EE	xbxpvpbe
1qre_A_120	1qre	A	126	133	AVGDDTFI	EE-TT-EE	bbxplbxb
1qre_A_138	1qre	A	143	150	KVGNNCVL	EE-TT-EE	bxxxlbbb
1qw9_A_484	1qw9	A	488	495	TLPKLSWN	EE-SSEEE	xbpplbbb
1sox_A_411	1sox	A	418	425	PVEAGTEL	EE-TT-EE	wbxpvbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kgq_A_139	1kgq	A	NPI2-AMINOPIMELIC ACID	M - 139
1kgq_A_139	1kgq	A	NPI2-AMINOPIMELIC ACID	D - 141
1kgq_A_139	1kgq	A	SCOSUCCINAMIDE-COA	D - 141
1kgq_A_139	1kgq	A	NPI2-AMINOPIMELIC ACID	T - 142
1kgq_A_139	1kgq	A	SCOSUCCINAMIDE-COA	T - 142
1ocx_A_74	1ocx	A	PBMTRIMETHYL LEAD ION	F - 81
1pkh_A_133	1pkh	A	EGLETHYLENE GLYCOL	K - 139
1pkh_A_133	1pkh	A	EGLETHYLENE GLYCOL	G - 140
1qre_A_120	1qre	A	OCNCOBALT ION, 2 WATERS COORDINATED	Q - 120
1qre_A_120	1qre	A	BCTBICARBONATE ION	H - 122
1qre_A_120	1qre	A	OCNCOBALT ION, 2 WATERS COORDINATED	H - 122
1qre_A_120	1qre	A	OCNCOBALT ION, 2 WATERS COORDINATED	G - 123

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1ocx_A_74	1ocx	A	AC4PBM BINDING SITE FOR CHAIN B	F - 81

Clusters included in this Subclass

CLUSTER: AR.3.21

CLUSTER: AR.4.114

CLUSTER: AR.5.22

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