ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.16.1

Subclass Accession number: 672
Subclass: 4.16.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
EC : 1.2 (>50 %)  1.2.1 (>50 %)  1.2.1.3
GO : GO:0004028 (>50 %)  GO:0016620 (>50 %)  GO:0016903 (>50 %)
SCOP : 53719 (>50 %)  53720 (>50 %)  53721 (>50 %)

Number of loops: 6

Average sequence ID (%) : 12.4 +/- 14.7
Average RMSD (Å) : 0.667 +/- 0.207

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XpXGXpXX
(φψ)-conformation:	bbpeapbb

Pattern:	[aimtv]	[emry]	x	[efkl]	[dny]	x	[GS]	[degnr]	[ANST]	x	[aikmv]	[ACLVY]	x	[IWY]
Conservation:	-0.164	-0.540	-0.478	-0.775	-0.059	-0.554	3.023	-0.311	0.945	-0.679	-0.335	-0.104	-0.627	0.658

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1as4_A_237	1as4	A	240	253	VELKYTGNASALFI	EEEEBSSS-EEEEE	bbbxbxeabbbxbb
1bwv_S_126	1bwv	S	129	142	MRQEDKSRSIKYTI	EEEE-STT-EEEEE	bbxxFxeaxbbbbb
1fi4_A_297	1fi4	A	298	311	AYTFDAGPNAVLYY	EEEE-SSS-EEEEE	bbbbxxeaxbbbxb
1h4g_A_25	1h4g	A	27	40	TMILNHGGTFSAQW	EEEE-STT-EEEEE	bbbxbxeaxbbbbb
1m93_B_183	1m93	B	186	199	IELPYVGDTSMVVI	EEEEBSSS-EEEEE	bbbxxpeabbbbbb
1n0w_A_301	1n0w	A	301	314	YLRKGRGETRICKI	EEEE-STTBEEEEE	bxbxbxeaxbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	V - 297
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	A - 298
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	Y - 299
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	T - 300
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	F - 301
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	D - 302
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	G - 304
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	P - 305
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	Y - 310
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	Y - 311
1h4g_A_25	1h4g	A	PCAPYROGLUTAMIC ACID	M - 28
1h4g_A_25	1h4g	A	PCAPYROGLUTAMIC ACID	I - 29
1h4g_A_25	1h4g	A	PCAPYROGLUTAMIC ACID	L - 30
1h4g_A_25	1h4g	A	PCAPYROGLUTAMIC ACID	N - 31
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	Y - 301
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	L - 302
1n0w_A_301	1n0w	A	EDO1,2-ETHANEDIOL	R - 303
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	G - 305
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	R - 306
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	T - 309
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	R - 310
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	I - 311
1n0w_A_301	1n0w	A	EDO1,2-ETHANEDIOL	I - 311
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	C - 312
1n0w_A_301	1n0w	A	EDO1,2-ETHANEDIOL	C - 312

Clusters included in this Subclass

CLUSTER: HA.6.25