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Information on SUBCLASS 4.2.2
Subclass Accession number: 6753
Subclass: 4.2.2 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 27.7 +/- 24.0
Average RMSD (Å) : 0.658 +/- 0.261

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: hXhXXhGX
(φψ)-conformation: bbpabpeb
Pattern: [ailvy][aknrst][AFLVY][kltv][AFITV][adegkqrt][ceknqr][ADEP][G][iptv]
Conservation:-0.388-0.7470.195-0.519-0.337-0.623-0.4190.6652.587-0.414
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoz_A_4891aoz   A493502IRFVADNPGVEEEE--S-EEbbbxxabpeb
1aoz_A_881aoz   A91100YNFTVDNPGTEEEE--S-EEbbbbbabxex
1fwx_A_5441fwx   A547556VTFVAANPGVEEEE--S-EEbbbbxabxex
1gyc_A_4361gyc   A439448IRFQTDNPGPEEEE--S-EEbbbbxabpew
1itw_A_1861itw   A186195KAALIGAPGSEEEE--SSEEbbbbxabpeb
1j9q_A_2871j9q   A291300AFYTFQQPGIEEEE--S-EEbbbbxabxex
1m56_B_2361m56   B238247LWFRAEREGIEEEE-SS-EEbbbbxabxeb
1nif_*_1181nif   -122131LRFKATKPGVEEEE--S-EEbbbxxabweb
1nif_*_2871nif   -291300AFYTFRQPGVEEEE--S-EEbbbbxabxex
1qpo_A_401qpo   A4352ASLVTREAGVEEEEESS-EEbbxbxabxeb
2cua_A_1332cua   A135144VRYTFKRPGEEEEE--S-EEbbbbxabweb
2gpr_*_132gpr   -1322LKVLAPCDGTEEEE-SSSEEbxbxxabxeb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aoz_A_881aoz   A     NAGN-ACETYL-D-GLUCOSAMINE F - 90
1aoz_A_881aoz   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 91
1aoz_A_881aoz   A     NAGN-ACETYL-D-GLUCOSAMINE N - 92
1aoz_A_881aoz   A     CUCOPPER (II) ION F - 102
1aoz_A_881aoz   A     C2OCU-O-CU LINKAGE F - 102
1aoz_A_881aoz   A     CUCOPPER (II) ION H - 104
1aoz_A_881aoz   A     C2OCU-O-CU LINKAGE H - 104
1aoz_A_881aoz   A     C1OCU-O LINKAGE H - 104
1aoz_A_4891aoz   A     CUCOPPER (II) ION A - 504
1aoz_A_4891aoz   A     C2OCU-O-CU LINKAGE A - 504
1aoz_A_4891aoz   A     CUCOPPER (II) ION H - 506
1aoz_A_4891aoz   A     C2OCU-O-CU LINKAGE H - 506
1aoz_A_4891aoz   A     C1OCU-O LINKAGE H - 506
1aoz_A_4891aoz   A     CUCOPPER (II) ION C - 507
1gyc_A_4361gyc   A     NAGN-ACETYL-D-GLUCOSAMINE N - 436
1gyc_A_4361gyc   A     NAGN-ACETYL-D-GLUCOSAMINE T - 438
1gyc_A_4361gyc   A     CUCOPPER (II) ION F - 450
1gyc_A_4361gyc   A     CUCOPPER (II) ION H - 452
1gyc_A_4361gyc   A     CUCOPPER (II) ION C - 453
1j9q_A_2871j9q   A     NO2NITRITE ION V - 304
1nif_*_1181nif   *     CUCOPPER (II) ION V - 133
1nif_*_1181nif   *     CUCOPPER (II) ION H - 135
1nif_*_1181nif   *     MTOBOUND WATER H - 135
2cua_A_1332cua   A     ZNZINC ION I - 148
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gyc_A_4361gyc   A NA6NAG BINDING SITE FOR CHAIN AN - 436
1gyc_A_4361gyc   A CU2CU BINDING SITE FOR CHAIN AH - 452
1gyc_A_4361gyc   A CU4CU BINDING SITE FOR CHAIN AC - 453

Clusters included in this Subclass
CLUSTER: AR.4.12