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Information on SUBCLASS 4.8.1
Subclass Accession number: 6773
Subclass: 4.8.1 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 18.4 +/- 19.5
Average RMSD (Å) : 0.708 +/- 0.225

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XhXGpphX
(φψ)-conformation: bbplbpbb
Pattern: [fitvw]x[acfgilp][dhkprs][GN][dehnqst][ADNQST][FILVY]x
Conservation:-0.191-0.543-1.023-0.4752.290-0.1140.3240.573-0.840
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoz_A_2261aoz   A229237FAIGNHQLLEEETT--EEbbbxUbxbb
1aoz_A_4451aoz   A447455WHLHGHDFWEEETT--EEbbbxvbbbx
1evu_A_741evu   A7583IVRRGQSFYEEETTS-EEbbbxvbxbb
1gyc_A_2091gyc   A211219FSIDGHNLTEEETT--EEbbbpvbxbb
1gyc_A_3961gyc   A397405FHLHGHAFAEEETT--EExbbxvbbbx
1hg8_A_881hg8   A9098ISGSNITITEEEES-EEEbbeblxbbb
1jva_A_2851jva   A285292.FAKGTNVL.EETT-EEE.bxxvpxbx
1kcw_*_6161kcw   -616624TMCKGDSVVEEETT--EEbbbxgxxxb
1kcw_*_6371kcw   -639647IYFSGNTYLEEETT--EExbxpgbbxb
1kcw_*_9751kcw   -977985VHFHGHSFQEEETT--EExbbxvbbbb
1l9m_A_301l9m   A3038ILRRGQNFQEEETT--EEbbbxvbxbb
1nhc_A_591nhc   A5967EVPAGETLDEE-TT--EExxxpvbxxx
1pmi_*_4101pmi   -412420FVAPGSSIEEE-TT--EExbxpvxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aoz_A_4451aoz   A     CUCOPPER (II) ION H - 445
1aoz_A_4451aoz   A     CUCOPPER (II) ION P - 446
1aoz_A_4451aoz   A     CUCOPPER (II) ION W - 447
1aoz_A_4451aoz   A     CUCOPPER (II) ION H - 448
1aoz_A_4451aoz   A     C2OCU-O-CU LINKAGE H - 448
1aoz_A_4451aoz   A     C1OCU-O LINKAGE H - 448
1aoz_A_4451aoz   A     CUCOPPER (II) ION L - 449
1aoz_A_4451aoz   A     C1OCU-O LINKAGE L - 449
1aoz_A_4451aoz   A     CUCOPPER (II) ION H - 450
1aoz_A_4451aoz   A     C2OCU-O-CU LINKAGE H - 450
1aoz_A_4451aoz   A     C1OCU-O LINKAGE H - 450
1aoz_A_4451aoz   A     CUCOPPER (II) ION G - 451
1aoz_A_4451aoz   A     C1OCU-O LINKAGE G - 451
1gyc_A_2091gyc   A     NAGN-ACETYL-D-GLUCOSAMINE G - 215
1gyc_A_2091gyc   A     NAGN-ACETYL-D-GLUCOSAMINE H - 216
1gyc_A_2091gyc   A     NAGN-ACETYL-D-GLUCOSAMINE N - 217
1gyc_A_2091gyc   A     NAGN-ACETYL-D-GLUCOSAMINE T - 219
1gyc_A_3961gyc   A     CUCOPPER (II) ION P - 396
1gyc_A_3961gyc   A     CUCOPPER (II) ION F - 397
1gyc_A_3961gyc   A     CUCOPPER (II) ION H - 398
1gyc_A_3961gyc   A     CUCOPPER (II) ION L - 399
1gyc_A_3961gyc   A     CUCOPPER (II) ION H - 400
1gyc_A_3961gyc   A     CUCOPPER (II) ION G - 401
1gyc_A_3961gyc   A     NAGN-ACETYL-D-GLUCOSAMINE R - 408
1hg8_A_881hg8   A     NAGN-ACETYL-D-GLUCOSAMINE S - 93
1hg8_A_881hg8   A     NAGN-ACETYL-D-GLUCOSAMINE N - 94
1hg8_A_881hg8   A     NAGN-ACETYL-D-GLUCOSAMINE T - 96
1kcw_*_6371kcw   *     CUCOPPER (II) ION H - 637
1kcw_*_6371kcw   *     CUCOPPER (II) ION G - 638
1kcw_*_6371kcw   *     CUCOPPER (II) ION I - 639
1kcw_*_9751kcw   *     CUCOPPER (II) ION H - 975
1kcw_*_9751kcw   *     CUCOPPER (II) ION T - 976
1kcw_*_9751kcw   *     CUCOPPER (II) ION H - 978
1kcw_*_9751kcw   *     OOXYGEN ATOM H - 978
1kcw_*_9751kcw   *     CUCOPPER (II) ION F - 979
1kcw_*_9751kcw   *     OOXYGEN ATOM F - 979
1kcw_*_9751kcw   *     CUCOPPER (II) ION H - 980
1kcw_*_9751kcw   *     OOXYGEN ATOM H - 980
1kcw_*_9751kcw   *     CUCOPPER (II) ION G - 981
1kcw_*_9751kcw   *     OOXYGEN ATOM G - 981
1kcw_*_9751kcw   *     OOXYGEN ATOM H - 982
1nhc_A_591nhc   A     MANALPHA-D-MANNOSE E - 64
1nhc_A_591nhc   A     MANALPHA-D-MANNOSE T - 65
1nhc_A_591nhc   A     MANALPHA-D-MANNOSE D - 67
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gyc_A_2091gyc   A NA3NAG BINDING SITE FOR CHAIN AG - 215
1gyc_A_2091gyc   A NA3NAG BINDING SITE FOR CHAIN AN - 217
1gyc_A_3961gyc   A CU2CU BINDING SITE FOR CHAIN AH - 398
1gyc_A_3961gyc   A CU2CU BINDING SITE FOR CHAIN AH - 400
1kcw_*_6371kcw   * CU2TYPE I CU BINDING SITE IN DOMAIN 4.H - 637
1kcw_*_9751kcw   * CU4TYPE I CU BINDING SITE IN DOMAIN 6.H - 975
1kcw_*_9751kcw   * TRITRINUCLEAR CENTER. CU31 AND 32 ARE THE PAIR OF TYPE III CU AND CU34 IS THE TYPE II CU. O33 BRIDGES CU 31 - 32 AND O35 BRIDGES Y 107 - CU 34.H - 978
1kcw_*_9751kcw   * TRITRINUCLEAR CENTER. CU31 AND 32 ARE THE PAIR OF TYPE III CU AND CU34 IS THE TYPE II CU. O33 BRIDGES CU 31 - 32 AND O35 BRIDGES Y 107 - CU 34.H - 980

Clusters included in this Subclass
CLUSTER: AR.3.37
CLUSTER: AR.4.21
CLUSTER: AR.5.59