ArchDB - Biological DataBase of Protein Loops

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Information on SUBCLASS 5.11.1

Subclass Accession number: 6815
Subclass: 5.11.1

PSSM

Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 23.3 +/- 33.3
Average RMSD (Å) : 0.620 +/- 0.249

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 90-135

rho (°): 90-135

Consensus Sequence:	XhXXXpXXX
(φψ)-conformation:	bbpplbpbb

Pattern:	x	[GLV]	[ep]	[AEPT]	[GR]	[EKNST]	[atv]	[ALT]	x
Conservation:	-0.670	-0.761	0.184	-0.414	2.490	0.168	-0.459	0.034	-0.571

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1czf_A_54	1czf	A	54	62	EVPAGTTLD	EE-TT--EE	bxppvbxxx
1h2k_A_186	1h2k	A	189	197	IGMEGNVTP	EE-TT-EEE	bbxpvxbbx
1hg8_A_51	1hg8	A	51	59	QVPTGKQLD	EE-TT--EE	xxppvbxxx
1nhc_A_59	1nhc	A	59	67	EVPAGETLD	EE-TT--EE	xxxpvbxxx
1qre_A_149	1qre	A	149	157	VLEPRSAAI	EE-TT-EEE	bbxpvxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1h2k_A_186	1h2k	A	OGAN-OXALYOLGLYCINE	L - 186
1h2k_A_186	1h2k	A	OGAN-OXALYOLGLYCINE	L - 188
1h2k_A_186	1h2k	A	OGAN-OXALYOLGLYCINE	V - 195
1h2k_A_186	1h2k	A	FE2FE (II) ION	T - 196
1h2k_A_186	1h2k	A	OGAN-OXALYOLGLYCINE	T - 196
1h2k_A_186	1h2k	A	FE2FE (II) ION	H - 199
1h2k_A_186	1h2k	A	OGAN-OXALYOLGLYCINE	H - 199
1nhc_A_59	1nhc	A	MANALPHA-D-MANNOSE	E - 64
1nhc_A_59	1nhc	A	MANALPHA-D-MANNOSE	T - 65
1nhc_A_59	1nhc	A	MANALPHA-D-MANNOSE	D - 67

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h2k_A_186	1h2k	A	SO2SO4 BINDING SITE FOR CHAIN A	E - 192
1h2k_A_186	1h2k	A	SO2SO4 BINDING SITE FOR CHAIN A	G - 193
1h2k_A_186	1h2k	A	FE1FE BINDING SITE FOR CHAIN A	H - 199

Clusters included in this Subclass

CLUSTER: AR.4.119

CLUSTER: AR.5.41