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Information on SUBCLASS 5.20.1
Subclass Accession number: 6824
Subclass: 5.20.1 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 19.4 +/- 17.2
Average RMSD (Å) : 1.367 +/- 0.115

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hXXXphpXX
(φψ)-conformation: bbpaappbb
Pattern: x[IV][IM]x[PS]x[HS][IVY][EKS]x[AET][I]
Conservation:-1.2111.3760.690-0.7300.848-1.2110.227-0.055-0.152-0.826-0.7301.775
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoe_A_731aoe   A7485NIILSRSYENEIEEEE-TT---EExbbbbaaxxxbx
1ogo_X_1281ogo   X128139VVIRPVSISYAIEEEESTTS--EEbbbbwaabxbxb
1svp_A_1351svp   A135146KVMKPLHVKGTIEEEEETT--SEEbxbbxaaxxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aoe_A_731aoe   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 77
1aoe_A_731aoe   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 78
1aoe_A_731aoe   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE R - 79
1aoe_A_731aoe   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 80
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1svp_A_1351svp   A TRISINDBIS CAPSID PROTEIN HAS THE CATALYTIC TRIAD OF THE SERINE PROTEINASE. THE RESIDUES ARE SER 215, HIS 141, AND ASP 163 IN THE WILD-TYPE. IN THIS MUTANT STRUCTURE, THE ACTIVE SITE SER 215 WAS MUTATED TO ALA TO PREVENT AUTO-CATALYTIC CLEAVAGE BETWEEN TRP 264 AND SER 265.H - 141

Clusters included in this Subclass
CLUSTER: AR.6.55