Information on SUBCLASS 8.8.1 |
Subclass Accession number: 6885
Subclass: 8.8.1 Type: AR beta-beta link DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 33.3 +/- 15.8 Average RMSD (Å) : 0.467 +/- 0.058 Consensus geometry
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Consensus Sequence: | hhNGXhPXPXhX |
(φψ)-conformation: | bbllbbwpppbb |
Pattern: | x | x | [AV] | [IM] | [AGV] | [FIV] | [N] | [G] | x | [FV] | [P] | [GS] | [P] | [LT] | [IM] | x | [AGV] | [HKN] |
Conservation: | -1.072 | -1.022 | -0.269 | 0.115 | -0.824 | -0.329 | 1.454 | 1.454 | -0.824 | -0.124 | 1.900 | 0.084 | 1.900 | -0.416 | -0.000 | -0.923 | -0.824 | -0.279 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1aoz_A_22 | 1aoz | A | 22 | 39 | NIVMGINGQFPGPTIRAN | EEEEEETTBSS---EEEE | bbbxxblvbbwxxxxbbb |
1gyc_A_22 | 1gyc | A | 22 | 39 | RDAIVVNGVFPSPLITGK | EEEEEETTBSS---EEEE | bxbbbblvbbwxxxbbbO |
1j9q_A_58 | 1j9q | A | 59 | 76 | VHAMAFNGTVPGPLMVVH | EEEEEETTSSS---EEEE | bxxbbxvvbbwxxxbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gyc_A_22 | 1gyc | A | NAGN-ACETYL-D-GLUCOSAMINE | R - 22 |
1gyc_A_22 | 1gyc | A | NAGN-ACETYL-D-GLUCOSAMINE | D - 23 |
1gyc_A_22 | 1gyc | A | NAGN-ACETYL-D-GLUCOSAMINE | A - 24 |
1j9q_A_58 | 1j9q | A | CUCOPPER (II) ION | M - 62 |
1j9q_A_58 | 1j9q | A | CUCOPPER (II) ION | F - 64 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gyc_A_22 | 1gyc | A | NA1NAG BINDING SITE FOR CHAIN A | D - 23 |
Clusters included in this Subclass |
CLUSTER: AR.9.27 |