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Information on SUBCLASS 8.8.1
Subclass Accession number: 6885
Subclass: 8.8.1 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 33.3 +/- 15.8
Average RMSD (Å) : 0.467 +/- 0.058

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 0-45 rho (°): 45-90
Consensus Sequence: hhNGXhPXPXhX
(φψ)-conformation: bbllbbwpppbb
Pattern: xx[AV][IM][AGV][FIV][N][G]x[FV][P][GS][P][LT][IM]x[AGV][HKN]
Conservation:-1.072-1.022-0.2690.115-0.824-0.3291.4541.454-0.824-0.1241.9000.0841.900-0.416-0.000-0.923-0.824-0.279
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoz_A_221aoz   A2239NIVMGINGQFPGPTIRANEEEEEETTBSS---EEEEbbbxxblvbbwxxxxbbb
1gyc_A_221gyc   A2239RDAIVVNGVFPSPLITGKEEEEEETTBSS---EEEEbxbbbblvbbwxxxbbbO
1j9q_A_581j9q   A5976VHAMAFNGTVPGPLMVVHEEEEEETTSSS---EEEEbxxbbxvvbbwxxxbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gyc_A_221gyc   A     NAGN-ACETYL-D-GLUCOSAMINE R - 22
1gyc_A_221gyc   A     NAGN-ACETYL-D-GLUCOSAMINE D - 23
1gyc_A_221gyc   A     NAGN-ACETYL-D-GLUCOSAMINE A - 24
1j9q_A_581j9q   A     CUCOPPER (II) ION M - 62
1j9q_A_581j9q   A     CUCOPPER (II) ION F - 64
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gyc_A_221gyc   A NA1NAG BINDING SITE FOR CHAIN AD - 23

Clusters included in this Subclass
CLUSTER: AR.9.27