ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 9.7.1

Subclass Accession number: 6897
Subclass: 9.7.1

PSSM

Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 37.8 +/- 25.1
Average RMSD (Å) : 0.300 +/- 0.082

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	XpXFcphcXXpWX
(φψ)-conformation:	bbalabppaaabb

Pattern:	[FW]	[FTWY]	[DE]	[NP]	[FK]	[DNS]	[NSTY]	[FY]	[DN]	[GPST]	[GS]	x	[W]	[EGQ]	[K]
Conservation:	0.446	-0.534	0.220	-0.163	-0.448	-0.328	-0.898	0.592	0.205	-0.946	-0.302	-0.915	3.030	-0.661	0.702

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ajk_A_137	1ajk	A	137	151	FFEPFNSYNSGTWEK	EEE--SS--TTTEEE	bbbalabxbaaabbb
1cpn_*_158	1cpn	-	160	174	FWEPKSYFNPSTWEK	EEE--SS--TTTEEE	bbbalabxbaaabbb
1gbg_*_6	1gbg	-	6	20	FYEPFNNYNTGLWQK	EEE--SS--TTTEEE	bbbavabbxaaabbb
1mve_A_182	1mve	A	186	200	WTDNFDTFDGSRWGK	EEE--SS--TTTEEE	bbbalabxxaaabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ajk_A_137	1ajk	A	CACALCIUM ION	E - 139
1ajk_A_137	1ajk	A	CACALCIUM ION	P - 140
1ajk_A_137	1ajk	A	CACALCIUM ION	F - 141
1ajk_A_137	1ajk	A	CACALCIUM ION	N - 142
1cpn_*_158	1cpn	*	CACALCIUM ION	E - 162
1cpn_*_158	1cpn	*	CACALCIUM ION	P - 163
1cpn_*_158	1cpn	*	CACALCIUM ION	K - 164
1cpn_*_158	1cpn	*	CACALCIUM ION	S - 165
1gbg_*_6	1gbg	*	CACALCIUM ION	Y - 7
1gbg_*_6	1gbg	*	CACALCIUM ION	E - 8
1gbg_*_6	1gbg	*	CACALCIUM ION	P - 9
1gbg_*_6	1gbg	*	CACALCIUM ION	F - 10
1gbg_*_6	1gbg	*	CACALCIUM ION	N - 11
1mve_A_182	1mve	A	CACALCIUM ION	D - 188
1mve_A_182	1mve	A	MSESELENOMETHIONINE	N - 189
1mve_A_182	1mve	A	CACALCIUM ION	N - 189
1mve_A_182	1mve	A	MSESELENOMETHIONINE	F - 190
1mve_A_182	1mve	A	CACALCIUM ION	F - 190
1mve_A_182	1mve	A	MSESELENOMETHIONINE	D - 191
1mve_A_182	1mve	A	CACALCIUM ION	D - 191

Clusters included in this Subclass

CLUSTER: AR.8.19