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Information on SUBCLASS 5.1.1
Subclass Accession number: 696
Subclass: 5.1.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 47

Average sequence ID (%) : 15.0 +/- 16.9
Average RMSD (Å) : 0.479 +/- 0.167

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXpXpcXXX
(φψ)-conformation: bbpaagppb
Pattern: xx[dgnqst]x[adeknqst][adgknq][cehknqrty]xx
Conservation:-0.594-0.8621.189-0.2451.1231.558-0.386-0.891-0.894
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1arb_*_1971arb   -198206IYSPEKRVLEE-TTS-EEbbxaavbxa
1bco_*_5431bco   -546554CYTLDGRFIEE-TTS-EExbxaavxxa
1d8c_A_3461d8c   A349357IWDSEGNEIEE-TTS-EEbbxaavxxx
1dmg_A_31dmg   A614LLNVKGEKVEE-TTS-EEbbbaavxxa
1dvo_A_1421dvo   A143151RYDTEGYVTEE-TTS-EExbbaavxxa
1e79_A_521e79   A5361VEFSSGLKGEEETTS-EEbbxaagxxb
1ehi_A_2981ehi   A305313LLDENNVPYEE-TT--EEbbxaavxwb
1ei5_A_4861ei5   A493501RRDDKGEITEE-TTS-EEbbxaavxxa
1elu_A_2541elu   A255263TYGAKGEPTEE-TTS-EEbbxaavxwa
1eur_*_2211eur   -227235IINAAGAFQEE-TT--EEbbxaavxxb
1f61_A_2491f61   A252260ERTREGFYREE-TTS-EExbxaavxxx
1f7s_A_661f7s   A7482FVTAENCQKEE-TTS-EEbbxaalbxb
1f89_A_1091f89   A115123IFNEDGKLIEE-TTS-EEbbbaagxxa
1g97_A_1401g97   A142150VRNDNAEVLEE-TT--EExbxaalxxa
1gxr_A_7531gxr   A756764TGSGDKKATEEETTS-EEbbbaalbbb
1hqz_1_321hqz   13644SPNAKKEYEEE-TTS-EEbxxaavxxb
1i7d_A_2201i7d   A228236IVTPADERFEE-TT--EExbxaavxbb
1iq8_A_5431iq8   A546554VVNENDELLEE-TT--EExbxaavxpa
1jj2_C_21jj2   C513IYDLDGNTDEE-TTS-EExbxaavxpb
1jke_A_551jke   A5563FSDAEGKMNEE-TTS-EEbxxaagbxa
1jpm_A_251jpm   A3644ITYDSGAVGEEETTS-EEbbbaagxbb
1jyk_A_1371jyk   A139147VYGDDYKVQEE-TT-BEEbbbaavxxa
1k8w_A_2901k8w   A296304EIDDEGRVAEE-TTS-EEbxxaavbpx
1lml_*_2261lml   -231239QTFSDGHPAEE-TTS-EEbbxaavxwa
1lrz_A_1121lrz   A115123YLNHDGEITEE-TTS-EEbbbaavxxa
1lur_A_11831lur   A11881196EVDDTFCPTEE-TTS-EExbxaavbpa
1ly2_A_1091ly2   A111119WCQANNMWGEE-TTSSEEbxxaavbxb
1m4l_A_331m4l   A3947GRSYEGRPIEE-TTS-EEebxaavxxb
1mrj_*_2081mrj   -215223LINAQNQRVEE-TTS-EEbbxaavxxb
1mwv_A_3501mwv   A353361TKSPAGAHQEE-TT--EEbbxaavxxb
1nv8_A_2631nv8   A265273LKDSAGKYREE-TTSSEEbxxaavbxa
1nx9_A_751nx9   A8290VPMRDGVKLEE-TTS-EExxxaavxxb
1o1z_A_311o1z   A3745RLSKDGKVVEE-TTS-EEbbxaavxxb
1o50_A_1161o50   A119127VVDEKGEIVEE-TTS-EEbbxaavbxa
1ocv_A_981ocv   A102110RFNGAGKVVEE-TTS-EEbbxaavxxa
1onw_A_3561onw   A358366VMTPELRIEEE-TT--EEbbxaavbxa
1orv_A_3701orv   A375383ISNEEGYKHEE-TTS-EEbxxaavxxb
1p1j_A_1141p1j   A118126GIDAEGNDVEE-TTS-EEebxaavbpb
1p3c_A_1741p3c   A175183MLDQNQQIVEE-TTS-EExbxaavxxa
1prx_A_1331prx   A136144VFGPDKKLKEE-TTSBEEbbxaavxxa
1pvm_A_1021pvm   A105113VVDDPGRVVEE-TT--EEbbxaagxxa
1pvm_A_1541pvm   A157165VYNEKGEIKEE-TTS-EEbbbaavxxa
1skz_*_411skz   -4250QRSRYGCEFEE-TTS-EExbxaagbxb
1skz_*_961skz   -97105KRDKLGCEYEE-TTS-EExbxaavbxb
1st9_A_1411st9   A144152LINPEGKVVEE-TTSEEEbbxaavbxa
1ut9_A_2401ut9   A243251LKNAAGVVVEE-TTS-EExbxaavxxa
2ptd_*_652ptd   -7179RLTDDNTIVEE-TTS-EEbxbaavbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d8c_A_3461d8c   A     MSESELENOMETHIONINE I - 346
1d8c_A_3461d8c   A     MSESELENOMETHIONINE I - 357
1ehi_A_2981ehi   A     MGMAGNESIUM ION R - 301
1ehi_A_2981ehi   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID R - 301
1ehi_A_2981ehi   A     MGMAGNESIUM ION D - 303
1ehi_A_2981ehi   A     ADPADENOSINE-5'-DIPHOSPHATE D - 303
1ehi_A_2981ehi   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID D - 303
1ehi_A_2981ehi   A     ADPADENOSINE-5'-DIPHOSPHATE L - 305
1ehi_A_2981ehi   A     ADPADENOSINE-5'-DIPHOSPHATE G - 315
1ehi_A_2981ehi   A     MGMAGNESIUM ION E - 316
1ehi_A_2981ehi   A     ADPADENOSINE-5'-DIPHOSPHATE E - 316
1ehi_A_2981ehi   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID E - 316
1ehi_A_2981ehi   A     MGMAGNESIUM ION P - 317
1ehi_A_2981ehi   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID P - 317
1ehi_A_2981ehi   A     MGMAGNESIUM ION N - 318
1ehi_A_2981ehi   A     ADPADENOSINE-5'-DIPHOSPHATE N - 318
1ehi_A_2981ehi   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID N - 318
1f7s_A_661f7s   A     LDALAURYL DIMETHYLAMINE-N-OXIDE Y - 70
1f7s_A_661f7s   A     LDALAURYL DIMETHYLAMINE-N-OXIDE F - 72
1f7s_A_661f7s   A     LDALAURYL DIMETHYLAMINE-N-OXIDE F - 86
1f7s_A_661f7s   A     LDALAURYL DIMETHYLAMINE-N-OXIDE I - 88
1f7s_A_661f7s   A     LDALAURYL DIMETHYLAMINE-N-OXIDE W - 90
1g97_A_1401g97   A     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE R - 140
1g97_A_1401g97   A     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE I - 152
1jpm_A_251jpm   A     GOLGLYCEROL G - 41
1jpm_A_251jpm   A     GOLGLYCEROL A - 42
1jpm_A_251jpm   A     GOLGLYCEROL V - 43
1jpm_A_251jpm   A     GOLGLYCEROL G - 44
1jpm_A_251jpm   A     GOLGLYCEROL W - 45
1lur_A_11831lur   A     MSESELENOMETHIONINE A - 1183
1lur_A_11831lur   A     MSESELENOMETHIONINE D - 1184
1nv8_A_2631nv8   A     MEQN5-METHYLGLUTAMINE R - 273
1orv_A_3701orv   A     SULSULFATE ANION I - 374
1pvm_A_1541pvm   A     HGMERCURY (II) ION L - 154
1pvm_A_1541pvm   A     HGMERCURY (II) ION C - 169
1st9_A_1411st9   A     EGLETHYLENE GLYCOL F - 143
1st9_A_1411st9   A     EGLETHYLENE GLYCOL I - 145
1st9_A_1411st9   A     EGLETHYLENE GLYCOL E - 148
1st9_A_1411st9   A     EGLETHYLENE GLYCOL G - 149
1st9_A_1411st9   A     EGLETHYLENE GLYCOL K - 150
1st9_A_1411st9   A     EGLETHYLENE GLYCOL V - 151
1st9_A_1411st9   A     EGLETHYLENE GLYCOL K - 153
1st9_A_1411st9   A     EGLETHYLENE GLYCOL V - 154
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
2ptd_*_652ptd   * ACTACTIVE SITE.H - 82

Clusters included in this Subclass
CLUSTER: HA.4.12
CLUSTER: HA.4.90
CLUSTER: HA.4.96
CLUSTER: HA.5.42
CLUSTER: HA.6.44
CLUSTER: HA.6.66