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Information on SUBCLASS 0.1.25
Subclass Accession number: 6976
Subclass: 0.1.25 PSSM
Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 25.5 +/- 23.8
Average RMSD (Å) : 0.720 +/- 0.130

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: hDXp
(φψ)-conformation: bbaa
Pattern: [FVY][MVY][D][ans][AST][fry][CFIL][CPSTV][EPR][NRY][AIL]
Conservation:0.0310.0182.791-0.7590.349-0.779-0.142-0.859-0.187-0.264-0.199
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ax4_A_2201ax4   A221231VMDSARFCENAEEE-TTHHHHHbxxaaaaaaaa
1c7g_A_2111c7g   A212222FYDATRCVENAEEE-TTHHHHHbxbaaaaaaaa
1cg2_A_3911cg2   A391401YVDISAIPRRLEEEGGGHHHHHbbxaaaaaaaa
1gc0_A_1821gc0   A184194VVDNTYCTPYLEEE-TTTHHHHbbxaaaaeaaa
1n8p_A_1741n8p   A176186VVDNTFLSPYIEEE-TTTHHHHbbxaaaaeaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ax4_A_2201ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) D - 223
1ax4_A_2201ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) S - 224
1ax4_A_2201ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) A - 225
1ax4_A_2201ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) R - 226
1c7g_A_2111c7g   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 214
1c7g_A_2111c7g   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 216
1c7g_A_2111c7g   A     PLPPYRIDOXAL-5'-PHOSPHATE R - 217
1gc0_A_1821gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) D - 186
1gc0_A_1821gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) T - 188
1gc0_A_1821gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) Y - 189
1n8p_A_1741n8p   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 178
1n8p_A_1741n8p   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 180
1n8p_A_1741n8p   A     PLPPYRIDOXAL-5'-PHOSPHATE F - 181
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ax4_A_2201ax4   A LPAPYRIDOXAL 5-PHOSPHATE BINDING SITE.M - 222
1ax4_A_2201ax4   A LPAPYRIDOXAL 5-PHOSPHATE BINDING SITE.A - 225
1ax4_A_2201ax4   A LPAPYRIDOXAL 5-PHOSPHATE BINDING SITE.R - 226

Clusters included in this Subclass
CLUSTER: EH.3.97