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Information on SUBCLASS 5.1.4
Subclass Accession number: 699
Subclass: 5.1.4 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 32

Average sequence ID (%) : 14.9 +/- 15.9
Average RMSD (Å) : 0.578 +/- 0.276

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XXXXpcpXX
(φψ)-conformation: bbpaagpbb
Pattern: xxxx[denqswy][egns][dehknqsty]xxxx
Conservation:-0.797-0.622-0.353-0.3991.0412.472-0.200-0.286-0.362-0.495-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1acc_*_6391acc   -646655IEDTEGLKEV.EE-TTS-EEE.bbxaavxbbx.
1amu_A_4071amu   A416426RWLSDGNIEYLEE-TTS-EEEEbxxaavxxbxa
1b6r_A_1601b6r   A167176ARGFDGSTVF.EE-TTS-EEE.bbbaavxbbb.
1c3m_A_411c3m   A4857YKDKDNIEYH.EE-TT--EEE.bbxaavxxbb.
1d0n_A_671d0n   A7484VQLRNGILQYDEE-TTS-EEEEbxxaavxbbbb
1d4x_G_431d4x   G5060VQLRNGNLQYDEE-TTSSEEEEbxbaagxxxbb
1dn0_B_461dn0   B5059EINHSGSTNY.EE-TT--EEE.bbbaagxbbb.
1ecs_A_901ecs   A95105ELQGWGGTMAAEE-TTSSEEEEbpxaNgxbbbb
1em2_A_2601em2   A263273KNNEYGDTVYTEE-TT--EEEEbbbaavxbbbb
1fp5_A_3861fp5   A390400EKQRNGTLTVTEEETTTEEEEEbbbaaNbxxbb
1g0u_2_1071g0u   2112122TIPLGGSVHKLEE-TTS--EEEbbxaavxbbxb
1g0u_K_1071g0u   K112122YVDSDGTRLKGEEETTTEEEEExbbaavxbbxb
1g9g_A_4501g9g   A450460KFNADGTFQIPEE-TTS-EEEEbbxaavxbbbp
1iwm_A_591iwm   A6474LTNPLGSTELEEE-TTS-EEEEbbxaagxxabb
1jih_A_4381jih   A447457LKTKSYEVYRKEE-TT--EEEEbbxaalxbbbb
1jof_A_1681jof   A173183RKLASGEVELVEE-TTS-EEEEbxxaagxbbxa
1kcf_A_521kcf   A5868SQNEDSKVIIHEE-TTS-EEEEbxxaavxxbxa
1kt7_A_391kt7   A4656SVDENGHMSATEE-TT--EEEEbbxaavxxbbb
1kxv_C_451kxv   C5059GIDNDGTTTY.EE-TT--EEE.bbbaavxxbb.
1lci_*_4181lci   -425434YWDEDEHFFI.EE-TT--EEE.bbxaavxxbx.
1lqv_A_931lqv   A102112ELPPEGSRAHVEE-SS----EEbbxaagxxpxb
1mdb_A_4091mdb   A416426RLTRDGYIVVEEE-TTS-EEEEbbxaavxbbxa
1mrj_*_2081mrj   -215225LINAQNQRVTIEE-TTS-EEEEbbxaavxxbbb
1o20_A_951o20   A99109WVREDGLRIAREE-TTS-EEEEbbxaavxxbbb
1oew_A_671oew   A7686ISYGDGSSSSGEE-TTS-EEEEbbbaavxbbbe
1oj4_A_31oj4   A1929GQRADGYHTLQEE-TTS-EEEEebxaavxbxbb
1q15_A_1041q15   A108118IDEPNGELTVIEE-TTS-EEEEbxxaavxbbbb
1qho_A_6461qho   A653662IKRADGTIQW.EE-TTS-EEE.xbxaavxbbx.
1uuh_A_1391uuh   A147157IVNRDGTRYVQEE-TT--EEEEbbxaavxxxbb
2sli_*_4472sli   -452461RVDGEYNLYQ.EE-TT-BEEE.bbxaavxxbb.
3fru_A_913fru   A99109ELAPDNSSLPTEE-TTS-EEEEbxxaavxxbwb
3pmg_A_4893pmg   A491501LIFADGSRIIFEEETTS-EEEEbxxaagxbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1amu_A_4071amu   A     MGMAGNESIUM ION Y - 409
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE T - 411
1amu_A_4071amu   A     MGMAGNESIUM ION T - 411
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE D - 413
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE Y - 425
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE G - 427
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE R - 428
1d4x_G_431d4x   G     CACALCIUM ION A - 43
1ecs_A_901ecs   A     PG4TETRAETHYLENE GLYCOL Q - 97
1ecs_A_901ecs   A     PG4TETRAETHYLENE GLYCOL W - 99
1ecs_A_901ecs   A     PG4TETRAETHYLENE GLYCOL M - 103
1em2_A_2601em2   A     MSESELENOMETHIONINE D - 269
1em2_A_2601em2   A     MSESELENOMETHIONINE V - 271
1jof_A_1681jof   A     MSESELENOMETHIONINE L - 169
1jof_A_1681jof   A     MSESELENOMETHIONINE T - 171
1jof_A_1681jof   A     MSESELENOMETHIONINE V - 183
1jof_A_1681jof   A     MSESELENOMETHIONINE G - 184
1jof_A_1681jof   A     MSESELENOMETHIONINE S - 185
1jof_A_1681jof   A     MSESELENOMETHIONINE V - 186
1kt7_A_391kt7   A     RTLRETINOL I - 41
1kt7_A_391kt7   A     RTLRETINOL A - 43
1kt7_A_391kt7   A     RTLRETINOL E - 44
1kt7_A_391kt7   A     RTLRETINOL F - 45
1kt7_A_391kt7   A     RTLRETINOL A - 55
1kt7_A_391kt7   A     RTLRETINOL T - 56
1kt7_A_391kt7   A     RTLRETINOL A - 57
1kt7_A_391kt7   A     RTLRETINOL V - 61
1lqv_A_931lqv   A     NAGN-ACETYL-D-GLUCOSAMINE L - 93
1lqv_A_931lqv   A     PTYPHOSPHATIDYLETHANOLAMINE L - 93
1lqv_A_931lqv   A     NAGN-ACETYL-D-GLUCOSAMINE T - 94
1lqv_A_931lqv   A     PTYPHOSPHATIDYLETHANOLAMINE I - 95
1lqv_A_931lqv   A     NAGN-ACETYL-D-GLUCOSAMINE R - 96
1lqv_A_931lqv   A     PTYPHOSPHATIDYLETHANOLAMINE C - 97
1lqv_A_931lqv   A     PTYPHOSPHATIDYLETHANOLAMINE L - 99
1lqv_A_931lqv   A     PTYPHOSPHATIDYLETHANOLAMINE F - 114
1lqv_A_931lqv   A     PTYPHOSPHATIDYLETHANOLAMINE V - 116
1lqv_A_931lqv   A     NAGN-ACETYL-D-GLUCOSAMINE V - 118
1lqv_A_931lqv   A     PTYPHOSPHATIDYLETHANOLAMINE V - 118
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE Y - 409
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE G - 412
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE V - 425
1oew_A_671oew   A     THRTHREONINE I - 76
1oew_A_671oew   A     SERSERINE S - 77
1oew_A_671oew   A     THRTHREONINE S - 77
1oew_A_671oew   A     SERSERINE Y - 78
1oew_A_671oew   A     THRTHREONINE Y - 78
1oew_A_671oew   A     SERSERINE G - 79
1oew_A_671oew   A     THRTHREONINE G - 79
1oew_A_671oew   A     SERSERINE D - 80
1oj4_A_31oj4   A     MSESELENOMETHIONINE T - 3
1oj4_A_31oj4   A     MSESELENOMETHIONINE W - 5
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL K - 10
1oj4_A_31oj4   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 10
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL N - 12
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL L - 15
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL Q - 20
1oj4_A_31oj4   A     MSESELENOMETHIONINE R - 21
1oj4_A_31oj4   A     MSESELENOMETHIONINE D - 23
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL G - 24
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL Y - 25
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL H - 26
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL T - 27
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL L - 28
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL T - 30
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL F - 32
1oj4_A_31oj4   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 39
1oj4_A_31oj4   A     MSESELENOMETHIONINE I - 43
1oj4_A_31oj4   A     MSESELENOMETHIONINE E - 44
1oj4_A_31oj4   A     MSESELENOMETHIONINE L - 45
1qho_A_6461qho   A     MALMALTOSE Q - 648
1qho_A_6461qho   A     MALMALTOSE K - 650
1qho_A_6461qho   A     MALMALTOSE W - 662
3fru_A_913fru   A     NAGN-ACETYL-D-GLUCOSAMINE P - 102
3fru_A_913fru   A     NAGN-ACETYL-D-GLUCOSAMINE D - 103
3fru_A_913fru   A     NAGN-ACETYL-D-GLUCOSAMINE N - 104
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oew_A_671oew   A AC2THR BINDING SITE FOR CHAIN AS - 77
1oew_A_671oew   A AC1SER BINDING SITE FOR CHAIN AY - 78
1oew_A_671oew   A AC1SER BINDING SITE FOR CHAIN AG - 79
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AK - 10
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AN - 12
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AG - 24
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AY - 25
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AH - 26

Clusters included in this Subclass
CLUSTER: HA.4.35
CLUSTER: HA.5.58
CLUSTER: HA.5.78
CLUSTER: HA.6.11
CLUSTER: HA.6.29