Information on SUBCLASS 5.1.8 |
Subclass Accession number: 703
Subclass: 5.1.8 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0004252 (>50 %) GO:0008236 (>50 %) SCOP : 50493 (>50 %) 50494 (>50 %) 50514 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 9.3 +/- 9.9 Average RMSD (Å) : 1.067 +/- 0.379 Consensus geometry
|
Consensus Sequence: | hXppXXXhX |
(φψ)-conformation: | bbpaagppa |
Pattern: | x | x | [AT] | [AST] | x | [CLY] | [KTV] | [DT] | [KRS] | [AS] | [GQ] | [AKQ] | [FIY] | [SV] | [GNS] | [EKT] | [KTY] | x |
Conservation: | -1.694 | -1.558 | 1.415 | 0.494 | -1.147 | -0.190 | -0.737 | 1.148 | 0.357 | 1.434 | 0.987 | -0.190 | 1.041 | -0.193 | 0.631 | -0.053 | -0.874 | -0.874 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1fo6_A_105 | 1fo6 | A | 109 | 126 | FNTSILVDKSGKIVGKYR | EEEEEEE-TTS-EEEEEE | bxbbbbbxaagxxabbbb |
1ga6_A_199 | 1ga6 | A | 202 | 219 | GGTTLYTTSAGAYSNETV | EEEEEEE-TTS-EEEEEE | xbbxbbbxaavxpabbbx |
3ezm_A_68 | 3ezm | A | 68 | 85 | ELAAECKTRAQQFVSTKI | EEEEEEE-TTS-EEEEEE | xxbbbbxxaavbxbOebb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ga6_A_199 | 1ga6 | A | GOLGLYCEROL | T - 205 |
1ga6_A_199 | 1ga6 | A | GOLGLYCEROL | Y - 207 |
1ga6_A_199 | 1ga6 | A | GOLGLYCEROL | V - 219 |
Clusters included in this Subclass |
CLUSTER: HA.5.172 |