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PDB code:

Information on SUBCLASS 5.2.1

Subclass Accession number: 705 Subclass: 5.2.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation SCOP : 50964 (>75 %)  50964 (>75 %)

Number of loops: 103 Average sequence ID (%) : 16.7 +/- 18.3 Average RMSD (Å) : 0.435 +/- 0.240 Consensus geometry d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b77_A_26	1b77	A	31	40	TRAVNGTTYA	EE-TTSSEEE	bbxaavabbb
1bbz_A_24	1bbz	A	29	38	GYNHNGEWCE	EE-TTSSEEE	ebxaavabbx
1bf2_*_8	1bf2	-	10	19	SYDAQQANIT	EE-TTSSEEE	bxxaalabbb
1cfy_A_27	1cfy	A	31	40	GLNDAKTEIV	EE-TTSSEEE	bxxaalabxb
1crz_A_185	1crz	A	185	194	AWSPDGSKLA	EE-TTSSEEE	bxxaavabbx
1crz_A_229	1crz	A	229	238	AFSPDGSKLA	EE-TTSS-EE	bxxaavabbb
1crz_A_269	1crz	A	273	282	TWFPDSQNLA	EE-TTSSEEE	bxxaavabbb
1crz_A_378	1crz	A	382	391	LVSTDGRFKA	EE-TTS--EE	bbxaavabbb
1dl2_A_414	1dl2	A	414	423	WRSSVGDFFV	EE-SSSSEEE	xbxaavabbb
1dpe_*_51	1dpe	-	55	64	EVSEDGKTYT	EE-TTS-EEE	bbxaavabxb
1erj_A_349	1erj	A	351	360	KFSNDGEYLA	EE-TTSSEEE	bxxaavabbb
1erj_A_446	1erj	A	450	459	CFSPDGKFLA	EE-TTSSEEE	bxxaavabbx
1erj_A_488	1erj	A	492	501	DYFPSGDKLV	EE-TTSSEEE	bxxaavabbb
1erj_A_579	1erj	A	583	592	VFTRDGQSVV	EE-TTSSEEE	bxxaavabbb
1f1s_A_745	1f1s	A	752	761	FTNWDRTLTA	EE-TTSSEEE	xbxaavabbb
1f6f_B_8	1f6f	B	12	21	CRSPDKETFT	EEBSSSS-EE	bbbaavNbbb
1fwx_A_190	1fwx	A	191	200	DADYEGKWAF	EE-SSSSEEE	bbxaavabbb
1fwx_A_272	1fwx	A	273	282	NMAPDKKHLC	EE-TTSSEEE	bxxaavabbb
1g3p_*_36	1g3p	-	45	54	VCTGDETQCY	EE-TTSSEEE	bbxaalabbb
1ggx_A_193	1ggx	A	203	212	SHNEDYTIVE	EE-TTSSEEE	bbxaalabbb
1gpr_*_58	1gpr	-	62	71	NVFPTKHAIG	EE-TTSSEEE	bbpaavabbb
1gxr_A_533	1gxr	A	537	546	KLLPDGCTLI	EE-TTSSEEE	bxxaavabbb
1gxr_A_577	1gxr	A	581	590	AISPDSKVCF	EE-TTSSEEE	bbxaavabbb
1gxr_A_619	1gxr	A	623	632	DISNDGTKLW	EE-TTSSEEE	bbpaavabbb
1gxr_A_701	1gxr	A	705	714	KFAYCGKWFV	EE-TTSSEEE	bxxaavabbb
1gxr_A_742	1gxr	A	746	755	DISVDDKYIV	EE-TTS-EEE	bbxaalabbb
1gyh_A_58	1gyh	A	60	69	YSSKDRVNWR	EEESSSSEEE	bbbaavaxbb
1h3i_A_141	1h3i	A	146	155	YVYPDERTAL	EE-TTSSEEE	xbxaalaxbb
1ijq_A_682	1ijq	A	682	691	LLARDMRSCL	EE-TTSS-EE	bxxaavaxbb
1iz5_A_35	1iz5	A	40	49	AMDPSRVVLI	EE-TTSSEEE	bbxaavabbb
1ji1_A_64	1ji1	A	67	76	SNDPTGTFDY	EE-TTSSEEE	bbxaavabbb
1jmx_B_47	1jmx	B	49	58	MMAPDNRTAY	EE-TTSSEEE	bxxaalabbb
1jos_A_35	1jos	A	41	50	EVSSDLSYAK	EE-TTS-EEE	bbxaaUabbb
1jti_A_227	1jti	A	232	241	LPFASGTMSM	EEBTTSSEEE	bxxaavabbb
1jz7_A_224	1jz7	A	230	239	RFNDDFSRAV	EE-TTSSEEE	bbxaavabbb
1k32_A_344	1k32	A	347	356	IQDVSGTYVL	EE-TTSSSEE	bbxaavabbb
1k32_A_407	1k32	A	411	420	GVDRNGKFAV	EE-TTSSEEE	bbxaavabbb
1k32_A_452	1k32	A	453	462	TISDNSRFIA	EE-TTS-EEE	bbxaaUabbb
1k32_A_500	1k32	A	504	513	AFDADSKNLY	EE-TTS-EEE	bxxaalabbb
1k32_A_80	1k32	A	85	94	RFFPDGRKIA	EE-TTSSEEE	bxxaavabbx
1k8k_C_13	1k8k	C	15	24	AWNKDRTQIA	EE-TTSSEEE	bbxaavabbb
1k8k_C_145	1k8k	C	149	158	DWHPNSVLLA	EE-TTSSEEE	bxxaavaxbx
1k8k_C_205	1k8k	C	209	218	CFSANGSRVA	EE-SSSSEEE	bxxaavabbb
1k8k_C_99	1k8k	C	103	112	RWAPNEKKFA	EE-TTSSEEE	bxxaavabbb
1kgc_D_62	1kgc	D	65	74	AIAEDRKSST	EE-TTSSEEE	bbpaalabbb
1l0q_A_118	1l0q	A	122	131	ALSPDGKKLY	EE-TTSSEEE	bxxaavabbb
1l0q_A_160	1l0q	A	164	173	AVTPDGTKVY	EE-TTSSEEE	bbxaavabbx
1l0q_A_246	1l0q	A	250	259	AVTPDGKKVY	EE-TTSSEEE	bbxaavabbb
1l0q_A_37	1l0q	A	38	47	VISPDGTKVY	EE-TTSSEEE	bbxaavabbb
1l0q_A_79	1l0q	A	80	89	AVSPDGKQVY	EE-TTSSEEE	bbpaavabbb
1lf6_A_107	1lf6	A	111	120	NTDKKGRYRI	EEETTSSEEE	bbpaalabbb
1lj5_A_220	1lj5	A	226	235	LPYHGDTLSM	EEBTTSSEEE	bxxaalabbb
1lq9_A_46	1lq9	A	52	61	HASTDGTAVV	EE-TTSSEEE	bxxaavabbb
1lwd_A_291	1lwd	A	295	304	LVCPDGKTIE	EE-TTSS-EE	xbxaavaxbb
1mai_*_37	1mai	-	43	52	KLQEDCKTIW	EE-TTSSEEE	bxxaalabbx
1mda_H_69	1mda	H	71	80	VAGHSGSDFA	EE-TTSS-EE	bbxaavabbb
1n7o_A_651	1n7o	A	657	666	FTNWNQTLTA	EE-TTSSEEE	xbxaalabbb
1npu_A_62	1npu	A	65	74	IQLPNRHDFH	EE-TTSSEEE	bxxaagabbx
1nr0_A_106	1nr0	A	110	119	SWDSESKRIA	EE-TTS-EEE	bxxaalabbb
1nr0_A_193	1nr0	A	197	206	RYNPDGSLFA	EE-TTSSEEE	bxxaavabbb
1nr0_A_242	1nr0	A	246	255	TWSPDGTKIA	EE-TTSSEEE	bbxaavabbb
1nr0_A_25	1nr0	A	25	34	GNTPAGDKIQ	EE-TTSSEEE	bbxaavabbb
1nr0_A_327	1nr0	A	331	340	SSSADGKTLF	EE-TTSSEEE	bbxaavabbb
1nr0_A_451	1nr0	A	455	464	ALSNDKQFVA	EE-TTS-EEE	bbxaavabbb
1nr0_A_494	1nr0	A	498	507	AFSNNGAFLV	EE-TTSSEEE	bbxaavabbb
1nr0_A_539	1nr0	A	543	552	SWSPDNVRLA	EE-TTSSEEE	bxxaaUabbb
1nr0_A_62	1nr0	A	66	75	KTSPSGYYCA	EE-TTSSEEE	bxxaavabbb
1o4y_A_134	1o4y	A	139	148	TLTDDETQEI	EE-TTS-EEE	bbxaavabbb
1oga_D_62	1oga	D	65	74	QFGDARKDSS	EE-TTSSEEE	bbpaalabbb
1olz_A_31	1olz	A	33	42	LLSEDKDTLY	EE-TTSSEEE	bxxaavabbx
1orv_A_104	1orv	A	106	115	SVSPDRQFIL	EE-TTSSEEE	bxpaaUabbx
1orv_A_214	1orv	A	215	224	WWSPNGTFLA	EE-TTSSEEE	bxxaavabbx
1orv_A_363	1orv	A	363	372	HFTSDGNSFY	EE-TTSSEEE	bxxaavabbb
1orv_A_457	1orv	A	460	469	SFSNKAKYYQ	EE-TTSSEEE	bxxaalabbx
1osp_O_85	1osp	O	89	98	TISDDLGQTT	EE-TTS-EEE	bbpaavabbb
1pgu_A_491	1pgu	A	495	504	SISPSETYIA	EE-TTSSEEE	bxpaavabbx
1plq_*_34	1plq	-	39	48	AVDDSRVLLV	EE-TTSSEEE	bbxaavabbb
1q74_A_249	1q74	A	249	258	VVGPTGRAAA	EE-TTSSEEE	bxxaavabbb
1qfm_A_125	1qfm	A	131	140	AFSEDGEYFA	EE-TTSSEEE	bxxaavabbb
1qfm_A_177	1qfm	A	177	186	AWTHDGKGMF	EE-TTSSEEE	bxxaavabbx
1qfm_A_235	1qfm	A	239	248	ELSDDGRYVL	EE-TTS-EEE	bxxaavabxb
1qks_A_199	1qks	A	203	212	RLSASGRYLF	EE-TTS-EEE	bbxaavabbb
1qks_A_344	1qks	A	348	357	GLDGSHRYFI	EE-TTS-EEE	bxxaavabxb
1qks_A_504	1qks	A	509	518	EFNKDGTEVW	EE-TTSSEEE	bxxaavabbb
1qz1_A_245	1qz1	A	246	255	IFSDDSSELT	EE-TTS-EEE	bxxaavabbb
1ri6_A_135	1ri6	A	135	144	NISPDNRTLW	EE-TTSSEEE	bxxaavabxx
1ri6_A_180	1ri6	A	184	193	VFHPNEQYAY	EE-TTSSEEE	bbxaavabbb
1ri6_A_233	1ri6	A	237	246	HITPDGRHLY	EE-TTSSEEE	bbxaavabbb
1ri6_A_282	1ri6	A	283	292	NVDHSGKYLI	EE-TTSSEEE	bbxaavabbb
1ri6_A_43	1ri6	A	44	53	VVSPDKRYLY	EE-TTSSEEE	bxxaavabbx
1ri6_A_88	1ri6	A	90	99	STDHQGQFVF	EE-TTSSEEE	bbxaavabbb
1rwz_A_33	1rwz	A	38	47	AVDPANVAMV	EE-TTSSEEE	bbxaalabbb
1tbg_A_187	1tbg	A	191	200	SLAPDTRLFV	EE-TTSSEEE	bxxaavabbb
1tbg_A_229	1tbg	A	233	242	CFFPNGNAFA	EE-TTSSEEE	bxxaavabbb
1tbg_A_273	1tbg	A	277	286	SFSKSGRLLL	EE-SSS-EEE	bxxaavabbx
1tbg_A_58	1tbg	A	62	71	HWGTDSRLLV	EE-TTSSEEE	bxxaavNxbb
1ug9_A_89	1ug9	A	93	102	TTDNAGRWRL	EE-TTSSEEE	bbpaalabbb
1umw_A_441	1umw	A	443	452	ILYNDGDSLQ	EE-TTSSEEE	bbxaavaxbb
1uoy_A_26	1uoy	A	27	36	FCGCDRTGVV	EE-TTSSEEE	bxxaaUabxb
1utc_A_152	1utc	A	157	166	RTDAKQKWLL	EE-TTS-EEE	bbxaavabbb
2bbk_H_129	2bbk	H	130	139	SLTPDGKTLL	EE-TTSSEEE	bbxaavabbb
2bc2_A_8	2bc2	A	9	18	IKNETGTISI	EE-TTSSEEE	bbxaavabbb
2fbj_H_45	2fbj	H	50	59	EIHPDSGTIN	EE-TTSS-EE	bbxaaUabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1crz_A_185	1crz	A	MSESELENOMETHIONINE	A - 194
1crz_A_185	1crz	A	MSESELENOMETHIONINE	Y - 195
1crz_A_185	1crz	A	MSESELENOMETHIONINE	V - 196
1crz_A_185	1crz	A	MSESELENOMETHIONINE	T - 197
1crz_A_229	1crz	A	MSESELENOMETHIONINE	S - 235
1crz_A_229	1crz	A	MSESELENOMETHIONINE	K - 236
1crz_A_229	1crz	A	MSESELENOMETHIONINE	L - 237
1crz_A_229	1crz	A	MSESELENOMETHIONINE	A - 238
1crz_A_229	1crz	A	MSESELENOMETHIONINE	F - 239
1crz_A_269	1crz	A	MSESELENOMETHIONINE	F - 275
1crz_A_269	1crz	A	MSESELENOMETHIONINE	A - 282
1crz_A_378	1crz	A	MSESELENOMETHIONINE	S - 378
1crz_A_378	1crz	A	MSESELENOMETHIONINE	L - 382
1crz_A_378	1crz	A	MSESELENOMETHIONINE	V - 383
1crz_A_378	1crz	A	MSESELENOMETHIONINE	S - 384
1crz_A_378	1crz	A	MSESELENOMETHIONINE	T - 385
1dpe_*_51	1dpe	*	CDCADMIUM ION	K - 53
1dpe_*_51	1dpe	*	CDCADMIUM ION	E - 55
1dpe_*_51	1dpe	*	CDCADMIUM ION	T - 64
1dpe_*_51	1dpe	*	CDCADMIUM ION	H - 66
1g3p_*_36	1g3p	*	TRO2-HYDROXY-TRYPTOPHAN	L - 37
1g3p_*_36	1g3p	*	TRO2-HYDROXY-TRYPTOPHAN	E - 50
1g3p_*_36	1g3p	*	TRO2-HYDROXY-TRYPTOPHAN	T - 51
1ggx_A_193	1ggx	A	CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID	S - 197
1ggx_A_193	1ggx	A	CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID	K - 198
1ggx_A_193	1ggx	A	CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID	L - 199
1ggx_A_193	1ggx	A	CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID	D - 200
1ggx_A_193	1ggx	A	CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID	Q - 213
1ggx_A_193	1ggx	A	CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID	Y - 214
1ggx_A_193	1ggx	A	CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID	E - 215
1jz7_A_224	1jz7	A	DMSDIMETHYL SULFOXIDE	V - 227
1jz7_A_224	1jz7	A	DMSDIMETHYL SULFOXIDE	A - 228
1jz7_A_224	1jz7	A	DMSDIMETHYL SULFOXIDE	T - 229
1jz7_A_224	1jz7	A	DMSDIMETHYL SULFOXIDE	R - 230
1jz7_A_224	1jz7	A	DMSDIMETHYL SULFOXIDE	D - 233
1jz7_A_224	1jz7	A	CEAS-HYDROXY-CYSTEINE	Q - 245
1l0q_A_37	1l0q	A	MSESELENOMETHIONINE	A - 37
1l0q_A_37	1l0q	A	MSESELENOMETHIONINE	V - 48
1l0q_A_37	1l0q	A	MSESELENOMETHIONINE	A - 49
1l0q_A_37	1l0q	A	MSESELENOMETHIONINE	N - 50
1l0q_A_79	1l0q	A	MSESELENOMETHIONINE	T - 91
1l0q_A_118	1l0q	A	MSESELENOMETHIONINE	P - 118
1l0q_A_118	1l0q	A	MSESELENOMETHIONINE	L - 119
1l0q_A_160	1l0q	A	MSESELENOMETHIONINE	N - 176
1l0q_A_246	1l0q	A	YCM2-AMINO-3-(2-AMINO-2-HYDROXY-ETHYLSULFANYL)-PROPAN-1-OL	L - 262
1lj5_A_220	1lj5	A	DMSDIMETHYL SULFOXIDE	E - 225
1lj5_A_220	1lj5	A	DMSDIMETHYL SULFOXIDE	L - 226
1lj5_A_220	1lj5	A	DMSDIMETHYL SULFOXIDE	P - 227
1lwd_A_291	1lwd	A	ICTISOCITRIC ACID	S - 293
1lwd_A_291	1lwd	A	ICTISOCITRIC ACID	E - 306
1mai_*_37	1mai	*	I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE	R - 38
1mai_*_37	1mai	*	I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE	R - 40
1mai_*_37	1mai	*	I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE	Y - 42
1nr0_A_106	1nr0	A	MNMANGANESE (II) ION	S - 110
1nr0_A_106	1nr0	A	MNMANGANESE (II) ION	W - 111
1nr0_A_193	1nr0	A	MNMANGANESE (II) ION	R - 197
1nr0_A_193	1nr0	A	MNMANGANESE (II) ION	Y - 198
1orv_A_214	1orv	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 227
1orv_A_214	1orv	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 229
1orv_A_363	1orv	A	SULSULFATE ANION	H - 363
1orv_A_363	1orv	A	SULSULFATE ANION	I - 374
1pgu_A_491	1pgu	A	MSESELENOMETHIONINE	S - 492
1pgu_A_491	1pgu	A	MSESELENOMETHIONINE	D - 507
1plq_*_34	1plq	*	HGMERCURY (II) ION	G - 34
1qfm_A_125	1qfm	A	SGMMONOTHIOGLYCEROL	Y - 130
1qfm_A_177	1qfm	A	CSWCYSTEINE-S-DIOXIDE	A - 177
1qfm_A_177	1qfm	A	CSWCYSTEINE-S-DIOXIDE	M - 185
1qfm_A_177	1qfm	A	CSWCYSTEINE-S-DIOXIDE	F - 186
1qfm_A_177	1qfm	A	CSWCYSTEINE-S-DIOXIDE	Y - 187
1qfm_A_177	1qfm	A	CSWCYSTEINE-S-DIOXIDE	N - 188
1qfm_A_235	1qfm	A	SGL1-HYDROXY-1-THIO-GLYCEROL	M - 235
1qfm_A_235	1qfm	A	CSWCYSTEINE-S-DIOXIDE	G - 236
1qfm_A_235	1qfm	A	CSWCYSTEINE-S-DIOXIDE	G - 237
1qfm_A_235	1qfm	A	CSWCYSTEINE-S-DIOXIDE	A - 238
1qfm_A_235	1qfm	A	CSWCYSTEINE-S-DIOXIDE	E - 239
1qfm_A_235	1qfm	A	SGL1-HYDROXY-1-THIO-GLYCEROL	R - 252
1qks_A_199	1qks	A	DHEHEME D	V - 199
1qks_A_199	1qks	A	DHEHEME D	H - 200
1qks_A_199	1qks	A	DHEHEME D	I - 201
1qks_A_199	1qks	A	DHEHEME D	R - 203
1qks_A_344	1qks	A	DHEHEME D	H - 345
1qks_A_344	1qks	A	DHEHEME D	D - 346
1qks_A_504	1qks	A	DHEHEME D	V - 506
1qks_A_504	1qks	A	DHEHEME D	Q - 507
1qks_A_504	1qks	A	DHEHEME D	G - 508
1qks_A_504	1qks	A	DHEHEME D	E - 509
1qks_A_504	1qks	A	DHEHEME D	W - 522
2fbj_H_45	2fbj	H	NAGN-ACETYL-D-GLUCOSAMINE	E - 50
2fbj_H_45	2fbj	H	NAGN-ACETYL-D-GLUCOSAMINE	T - 57
2fbj_H_45	2fbj	H	NAGN-ACETYL-D-GLUCOSAMINE	I - 58
2fbj_H_45	2fbj	H	NAGN-ACETYL-D-GLUCOSAMINE	N - 59
2fbj_H_45	2fbj	H	NAGN-ACETYL-D-GLUCOSAMINE	Y - 60

Clusters included in this Subclass

CLUSTER: HA.4.6

CLUSTER: HA.5.5

CLUSTER: HA.5.93

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