Information on SUBCLASS 5.2.5 |
Subclass Accession number: 709
Subclass: 5.2.5 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 11.9 +/- 12.2 Average RMSD (Å) : 0.575 +/- 0.171 Consensus geometry
|
Consensus Sequence: | XXpXccppX |
(φψ)-conformation: | bbpaalabb |
Pattern: | x | [LMY] | x | [KLV] | [DS] | [APQ] | [DN] | [GKNR] | [DHRT] | x | x | x | [AIY] | x |
Conservation: | -0.796 | 0.745 | -0.341 | -0.117 | 1.497 | -0.047 | 2.458 | -0.016 | -0.536 | -1.056 | -0.666 | 0.299 | -0.240 | -1.186 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1czy_A_430 | 1czy | A | 432 | 445 | LMLLDQNNREHVID | EEE--TTSS--EEE | bbbxxaavaxxxbb |
1g6s_A_63 | 1g6s | A | 63 | 76 | SYTLSADRTRCEII | EEEE-TTS--EEEE | xbbbxaavabbbbx |
1n0u_A_575 | 1n0u | A | 575 | 588 | ALSKSPNKHNRIYL | EEEE-TTSS-EEEE | xbbbxaavabbbbb |
1nr0_A_414 | 1nr0 | A | 416 | 429 | GLAVSADGDIAVAA | EEEE-TTSS-EEEE | bbbbxaavabbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1g6s_A_63 | 1g6s | A | FMTFORMIC ACID | S - 63 |
1g6s_A_63 | 1g6s | A | FMTFORMIC ACID | Y - 64 |
1g6s_A_63 | 1g6s | A | FMTFORMIC ACID | T - 65 |
1g6s_A_63 | 1g6s | A | FMTFORMIC ACID | L - 66 |
1g6s_A_63 | 1g6s | A | FMTFORMIC ACID | S - 67 |
1g6s_A_63 | 1g6s | A | FMTFORMIC ACID | R - 72 |
1g6s_A_63 | 1g6s | A | FMTFORMIC ACID | C - 73 |
1g6s_A_63 | 1g6s | A | FMTFORMIC ACID | E - 74 |
Clusters included in this Subclass |
CLUSTER: HA.5.127 |
CLUSTER: HA.7.56 |