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Information on SUBCLASS 5.2.5
Subclass Accession number: 709
Subclass: 5.2.5 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 11.9 +/- 12.2
Average RMSD (Å) : 0.575 +/- 0.171

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXpXccppX
(φψ)-conformation: bbpaalabb
Pattern: x[LMY]x[KLV][DS][APQ][DN][GKNR][DHRT]xxx[AIY]x
Conservation:-0.7960.745-0.341-0.1171.497-0.0472.458-0.016-0.536-1.056-0.6660.299-0.240-1.186
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1czy_A_4301czy   A432445LMLLDQNNREHVIDEEE--TTSS--EEEbbbxxaavaxxxbb
1g6s_A_631g6s   A6376SYTLSADRTRCEIIEEEE-TTS--EEEExbbbxaavabbbbx
1n0u_A_5751n0u   A575588ALSKSPNKHNRIYLEEEE-TTSS-EEEExbbbxaavabbbbb
1nr0_A_4141nr0   A416429GLAVSADGDIAVAAEEEE-TTSS-EEEEbbbbxaavabbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g6s_A_631g6s   A     FMTFORMIC ACID S - 63
1g6s_A_631g6s   A     FMTFORMIC ACID Y - 64
1g6s_A_631g6s   A     FMTFORMIC ACID T - 65
1g6s_A_631g6s   A     FMTFORMIC ACID L - 66
1g6s_A_631g6s   A     FMTFORMIC ACID S - 67
1g6s_A_631g6s   A     FMTFORMIC ACID R - 72
1g6s_A_631g6s   A     FMTFORMIC ACID C - 73
1g6s_A_631g6s   A     FMTFORMIC ACID E - 74

Clusters included in this Subclass
CLUSTER: HA.5.127
CLUSTER: HA.7.56