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Information on SUBCLASS 5.3.2
Subclass Accession number: 711
Subclass: 5.3.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 14.4 +/- 16.1
Average RMSD (Å) : 0.546 +/- 0.120

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXpXpcXXh
(φψ)-conformation: bbpaalpbb
Pattern: xx[dgrst][ADGKRS][DEKNS][dgn]xx[filtvy]x
Conservation:-0.975-0.3030.3860.1831.9481.205-0.456-0.9610.146-1.173
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8d_*_3911a8d   -394403LYDDKNASLGEE-SSS-EEExbxaavxxae
1c3m_A_411c3m   A4857YKDKDNIEYHEE-TT--EEEbbxaavxxbb
1df7_A_1431df7   A143152RFSRSGLRYREE-TTS-EEEbbxaavxxbb
1gpm_A_1281gpm   A128137ALTADGKPLLEE-TTS-EEEbbxaavxwbb
1jvw_A_881jvw   A94103GRLRDGTVFDEE-TTS-EEEbbxaavpxab
1k5n_B_551k5n   B5564SFSKDWSFYLEE-TTS-EEEbbxaavxxbb
1l6x_A_3971l6x   A397406VLDSDGSFFLEE-TTS-EEEbxxaavxbbb
1nbc_A_511nbc   A6069IIGSNGSYNGEE-TT--EEEbbxaavxbbx
1oj4_A_31oj4   A1928GQRADGYHTLEE-TTS-EEEebxaavxbxb
1qho_A_6461qho   A653662IKRADGTIQWEE-TTS-EEExbxaavxbbx
1qme_A_791qme   A7988IYDRNGVPIAEE-TTS-EEEbbxaavxwab
1rku_A_1091rku   A115124EIDDSDRVVGEE-TTS-EEEbbxaavxxab
2sli_*_4472sli   -452461RVDGEYNLYQEE-TT-BEEEbbxaavxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a8d_*_3911a8d   *     AUGOLD ION Q - 391
1a8d_*_3911a8d   *     AUGOLD ION L - 404
1df7_A_1431df7   A     GOLGLYCEROL R - 143
1df7_A_1431df7   A     GOLGLYCEROL R - 152
1df7_A_1431df7   A     GOLGLYCEROL L - 153
1df7_A_1431df7   A     GOLGLYCEROL Y - 154
1df7_A_1431df7   A     GOLGLYCEROL Y - 156
1gpm_A_1281gpm   A     CITCITRIC ACID S - 142
1gpm_A_1281gpm   A     CITCITRIC ACID H - 143
1k5n_B_551k5n   B     GOLGLYCEROL S - 55
1k5n_B_551k5n   B     GOLGLYCEROL F - 56
1k5n_B_551k5n   B     GOLGLYCEROL S - 57
1k5n_B_551k5n   B     GOLGLYCEROL K - 58
1k5n_B_551k5n   B     GOLGLYCEROL W - 60
1k5n_B_551k5n   B     GOLGLYCEROL Y - 63
1oj4_A_31oj4   A     MSESELENOMETHIONINE T - 3
1oj4_A_31oj4   A     MSESELENOMETHIONINE W - 5
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL K - 10
1oj4_A_31oj4   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 10
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL N - 12
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL L - 15
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL Q - 20
1oj4_A_31oj4   A     MSESELENOMETHIONINE R - 21
1oj4_A_31oj4   A     MSESELENOMETHIONINE D - 23
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL G - 24
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL Y - 25
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL H - 26
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL T - 27
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL L - 28
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL T - 30
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL F - 32
1oj4_A_31oj4   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 39
1oj4_A_31oj4   A     MSESELENOMETHIONINE I - 43
1oj4_A_31oj4   A     MSESELENOMETHIONINE E - 44
1oj4_A_31oj4   A     MSESELENOMETHIONINE L - 45
1qho_A_6461qho   A     MALMALTOSE Q - 648
1qho_A_6461qho   A     MALMALTOSE K - 650
1qho_A_6461qho   A     MALMALTOSE W - 662
1rku_A_1091rku   A     EDO1,2-ETHANEDIOL L - 109
1rku_A_1091rku   A     EDO1,2-ETHANEDIOL K - 113
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AK - 10
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AN - 12
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AG - 24
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AY - 25
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AH - 26

Clusters included in this Subclass
CLUSTER: HA.5.34
CLUSTER: HA.6.53