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Information on SUBCLASS 5.6.1
Subclass Accession number: 722
Subclass: 5.6.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 8.5 +/- 10.7
Average RMSD (Å) : 0.818 +/- 0.293

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XpXXpXXXX
(φψ)-conformation: bbpabaabb
Pattern: xxxx[adns][adep]xxxx[agilwy]x
Conservation:-0.3450.190-0.400-0.4721.8182.006-0.9160.651-0.871-0.437-0.906-0.317
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a0t_P_3351a0t   P344355TTPLSENWSVAPEEESSSSEEEEEbbxabaabbbbw
1e6t_A_431e6t   A4859VRQSSAQNRKYTEE--SSSEEEEEbbxabaabbbxb
1f1s_A_7361f1s   A738749SVKLNDHFALAAEEESSSSEEEEEbbbabaabbbbb
1j5v_A_2411j5v   A242253RESISATVNYWSEE-S-SSEEEEEbbxabaabbbbb
1jg1_A_1791jg1   A188199PVGSYHLWQELLEE-SSSS-EEEEwbbabaabbbxb
1jo8_A_241jo8   A2839IEFVDDDWWLGEEE--SSSEEEEExbxabaabbbbb
1kmo_A_2781kmo   A288299KYAPDEVHTFNSEE-SSSSEEEEEbbbabaabbbbb
1nrw_A_1951nrw   A197208LVSSAEHNFELSEE-SSTTEEEEEbbbabaabbbbb
1qr0_A_1901qr0   A193204TYEVDPGYKMAVEE-S-TTEEEEExbxabaabbbbb
1utc_A_301utc   A3041LTMESDKFICIREE-SSSSEEEEEbbbabaabbbbx
3prn_*_1933prn   -199210AYKFNDAGTVGLEE--SSSEEEEEbbxabaabbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j5v_A_2411j5v   A     MSESELENOMETHIONINE L - 241
1j5v_A_2411j5v   A     ZN3ZINC ION, 1 WATER COORDINATED T - 248
1j5v_A_2411j5v   A     ZN3ZINC ION, 1 WATER COORDINATED V - 249
1j5v_A_2411j5v   A     MSESELENOMETHIONINE S - 253
1kmo_A_2781kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE R - 279
1kmo_A_2781kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE D - 281
1kmo_A_2781kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE L - 283
1kmo_A_2781kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE H - 295
1kmo_A_2781kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE F - 297
1kmo_A_2781kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE Y - 303
1kmo_A_2781kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE D - 305
1nrw_A_1951nrw   A     PO4PHOSPHATE ION S - 200
1nrw_A_1951nrw   A     CACALCIUM ION S - 200
1nrw_A_1951nrw   A     PO4PHOSPHATE ION E - 206

Clusters included in this Subclass
CLUSTER: HA.4.53
CLUSTER: HA.6.22