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Information on SUBCLASS 3.4.1
Subclass Accession number: 7259
Subclass: 3.4.1 PSSM
Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 10.8 +/- 16.2
Average RMSD (Å) : 0.710 +/- 0.200

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXXhXXp
(φψ)-conformation: bbpbpaa
Pattern: [agikltv]xx[afilmptv][degnpst]x[dehksy]x[acfgilvw]
Conservation:-0.8951.025-0.4010.6270.818-0.5151.422-0.555-1.526
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bsg_*_941bsg   -94102RILYTQDDVEE---HHHHxbbbbaaaa
1e4m_M_301e4m   M3240GVASSAYQIEEE--HHHHbbbbbaaaa
1ec7_A_3091ec7   A309317IPLADPHFWEEB--HHHHbxxbxaaaa
1ekb_B_1561ekb   B160168VPLLSNEKCEEB--HHHHbxxbxaaaa
1fxy_A_1561fxy   A160168APVLSQAKCEEB--HHHHbxxxxaaaa
1gs5_A_651gs5   A6573LRVTPADQIEE-B-HHHHbxpbxaaaa
1h49_A_291h49   A3139GAATSAYQIEEE--HHHHbbbbbaaaa
1hj9_A_1561hj9   A160168APILSDSSCEEB--HHHHbxxxxaaaa
1iic_A_2851iic   A286294IQIFTKEEFEE---HHHHbbxxbaaaa
1is8_A_1511is8   A151159KQVLGLSKLEE---HHHHgxbbxaaaa
1kap_P_271kap   P2735HPSYTVDQAEE---HHHHbxbbxaaaa
1kig_H_1561kig   H160168VPYVDRSTCEEB--HHHHbxxxbaaaa
1l5j_A_6061l5j   A608616TIKLNKEPIEE---HHHHbbxbxaaaa
1lc0_A_531lc0   A5361VRQISLEDAEEB--HHHHxxxbxaaaa
1lto_A_1561lto   A160168VPIMENHICEEB--HHHHbxxbxaaaa
1m6i_A_2621m6i   A263271TPRSLSAIDEE---HHHHbpxbxaaaa
1og5_A_961og5   A96104GRGIFPLAEEE---HHHHxxxbxaaaa
1pmi_*_1101pmi   -111119QAHPDKKLGEE---HHHHbbbxxaaaa
1rfn_A_1561rfn   A160168VPLVDRATCEEB--HHHHbxxbpaaaa
1uf9_A_1271uf9   A130138LVAAPLEEREE---HHHHxxbbpaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e4m_M_301e4m   M     GOLGLYCEROL S - 36
1e4m_M_301e4m   M     GOLGLYCEROL Q - 39
1ec7_A_3091ec7   A     MGMAGNESIUM ION L - 311
1gs5_A_651gs5   A     NLGN-ACETYL-L-GLUTAMATE L - 65
1gs5_A_651gs5   A     NLGN-ACETYL-L-GLUTAMATE R - 66
1gs5_A_651gs5   A     NLGN-ACETYL-L-GLUTAMATE T - 68
1gs5_A_651gs5   A     NLGN-ACETYL-L-GLUTAMATE I - 76
1gs5_A_651gs5   A     NLGN-ACETYL-L-GLUTAMATE L - 80
1h49_A_291h49   A     BGCBETA-D-GLUCOSE S - 35
1h49_A_291h49   A     BGCBETA-D-GLUCOSE Q - 38
1m6i_A_2621m6i   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 262
1og5_A_961og5   A     HECHEME C R - 97
1og5_A_961og5   A     SWFS-WARFARIN R - 97
1og5_A_961og5   A     SWFS-WARFARIN G - 98
1og5_A_961og5   A     SWFS-WARFARIN I - 99
1og5_A_961og5   A     SWFS-WARFARIN F - 100
1og5_A_961og5   A     SWFS-WARFARIN P - 101
1og5_A_961og5   A     SWFS-WARFARIN L - 102
1og5_A_961og5   A     SWFS-WARFARIN A - 103
1pmi_*_1101pmi   *     ZNZINC ION Q - 111
1pmi_*_1101pmi   *     ZNZINC ION A - 112
1pmi_*_1101pmi   *     ZNZINC ION H - 113
1uf9_A_1271uf9   A     MSESELENOMETHIONINE E - 136
1uf9_A_1271uf9   A     MSESELENOMETHIONINE R - 138
1uf9_A_1271uf9   A     MSESELENOMETHIONINE V - 139
1uf9_A_1271uf9   A     MSESELENOMETHIONINE R - 140
1uf9_A_1271uf9   A     MSESELENOMETHIONINE R - 141
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gs5_A_651gs5   A NLGNLG BINDING SITE FOR CHAIN AR - 66
1gs5_A_651gs5   A NLGNLG BINDING SITE FOR CHAIN AL - 80
1h49_A_291h49   A AC4BGC BINDING SITE FOR CHAIN AQ - 38
1og5_A_961og5   A AC1HEC BINDING SITE FOR CHAIN AR - 97
1og5_A_961og5   A AC3SWF BINDING SITE FOR CHAIN AG - 98
1og5_A_961og5   A AC3SWF BINDING SITE FOR CHAIN AF - 100

Clusters included in this Subclass
CLUSTER: EH.2.115
CLUSTER: EH.2.67
CLUSTER: EH.4.109
CLUSTER: EH.4.227
CLUSTER: EH.4.38