ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.10.3

Subclass Accession number: 7287
Subclass: 3.10.3

PSSM

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 12.2 +/- 12.1
Average RMSD (Å) : 0.500 +/- 0.082

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	VXhXpXp
(φψ)-conformation:	bbpapaa

Pattern:	x	[VW]	x	[AP]	[CETW]	[DNS]	x	x	[ADET]	[AST]	[AEK]	x	[AL]	[AIVW]	[EKL]
Conservation:	-0.704	0.932	-0.931	1.498	-0.931	1.730	-0.704	-1.083	-0.172	1.228	0.263	-1.311	0.588	-0.552	0.149

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ejd_A_364	1ejd	A	364	378	QVMATDLRASASLVL	EE--SSHHHHHHHHH	xbbbaxaaaaaaaaa
1luc_A_170	1luc	A	171	185	YVVAESASTTEWAAE	EE---SHHHHHHHHH	bbxxabaaaaaaaaa
1ni4_B_143	1ni4	B	144	158	VVSPWNSEDAKGLIK	EE---SHHHHHHHHH	bbbxaxaaaaaaaaa
1qgd_A_489	1qgd	A	490	504	TWRPCDQVESAVAWK	EE--SSHHHHHHHHH	bbbxabaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ejd_A_364	1ejd	A	PO4PHOSPHATE ION	T - 368
1ejd_A_364	1ejd	A	PO4PHOSPHATE ION	L - 370
1luc_A_170	1luc	A	EDO1,2-ETHANEDIOL	E - 175
1luc_A_170	1luc	A	EDO1,2-ETHANEDIOL	S - 176
1luc_A_170	1luc	A	EDO1,2-ETHANEDIOL	S - 178
1luc_A_170	1luc	A	EDO1,2-ETHANEDIOL	T - 179
1luc_A_170	1luc	A	EDO1,2-ETHANEDIOL	W - 182
1ni4_B_143	1ni4	B	MSESELENOMETHIONINE	S - 146
1ni4_B_143	1ni4	B	MSESELENOMETHIONINE	P - 147
1ni4_B_143	1ni4	B	MSESELENOMETHIONINE	W - 148
1ni4_B_143	1ni4	B	MSESELENOMETHIONINE	N - 149
1ni4_B_143	1ni4	B	MSESELENOMETHIONINE	I - 157
1ni4_B_143	1ni4	B	MSESELENOMETHIONINE	K - 158
1ni4_B_143	1ni4	B	MSESELENOMETHIONINE	I - 161

Clusters included in this Subclass

CLUSTER: EH.3.117