Logo
Information on SUBCLASS 5.9.1
Subclass Accession number: 729
Subclass: 5.9.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 12.8 +/- 14.0
Average RMSD (Å) : 0.567 +/- 0.197

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXXpcXXpX
(φψ)-conformation: bpaabaabb
Pattern: [AILV]x[DKNP]x[KNQ][dn][APQT][ADGNRS][dkq][CIKTV][hlv]x
Conservation:0.742-1.3740.483-1.0221.6891.4880.268-0.3500.126-0.288-0.453-1.311
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f9v_A_4201f9v   A424435VTKIQNTAQVHEEEEGGGTT-EEEbbxaabaabbxb
1g72_A_751g72   A7788ALNLNDPGKIVWEEETT-TTSEEEbbxaabaabxab
1j0w_A_371j0w   A4051LWDVQNPRVKLIEEESSSTT-EEEbbxaabaaxxab
1m2t_B_4291m2t   B429440IRPKQLQSQCLTEEETT-TTEEEEbbpaabaabbxb
1oyg_A_1031oyg   A110121AGDPKNADDTSIEE-TT-TT--EEbexaabaaxbbx
1qxm_A_141qxm   A1728ISPSNNTNKVLDEEETT-TTEEEEbbxaabaabbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j0w_A_371j0w   A     MSESELENOMETHIONINE P - 54
1oyg_A_1031oyg   A     EDO1,2-ETHANEDIOL H - 104
1oyg_A_1031oyg   A     EDO1,2-ETHANEDIOL Q - 126
1oyg_A_1031oyg   A     EDO1,2-ETHANEDIOL K - 127
1qxm_A_141qxm   A     EDO1,2-ETHANEDIOL D - 28
1qxm_A_141qxm   A     EDO1,2-ETHANEDIOL K - 29

Clusters included in this Subclass
CLUSTER: HA.5.72
CLUSTER: HA.7.40