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Information on SUBCLASS 4.1.3
Subclass Accession number: 7329
Subclass: 4.1.3 PSSM
Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 11.7 +/- 14.5
Average RMSD (Å) : 0.800 +/- 0.196

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: hXXpXXXp
(φψ)-conformation: bbaappaa
Pattern: [acilpy][acglmtv][adnpqst][aegpqs][DEGKNQT][acltv][dpst]x[ADEKNT]xx[aefklm]x
Conservation:-0.177-0.253-0.335-0.7191.2550.4721.602-1.1171.931-0.989-0.627-0.419-0.624
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1euh_A_2551euh   A258270IVLEDADLELTAKEE-TTS-HHHHHHxbxaaxxaaaaaa
1geq_A_1351geq   A139151LAAPNTPDERLKVEE-TT--HHHHHHbbbaaxxaaaaaa
1h16_A_3701h16   A374386LWSEKLPLNFKKFEE-TTS-HHHHHHxxbaaxxaaaaaa
1kae_A_2381kae   A242254IADSGATPDFVASEE-TTS-HHHHHHbbxaaxbaaaaaa
1l6r_A_1871l6r   A189201ACPANATDNIKAVEE-TTS-HHHHHHbbxaaxxaaaaaa
1l9x_A_461l9x   A4961PVRLDLTEKDYEIEE-SS--HHHHHHwbxaaxxaaaaaa
1ll2_A_341ll2   A3850LTTPQVSDTMRKAEE-TTS-HHHHHHxbbaaxxaaaaaa
1m2t_A_21m2t   A719RTDQQTTGAEYFSEESTT--HHHHHHxbbaapxaaaaaa
1oql_A_21oql   A719RVTHQTTGDEYFREESTT--HHHHHHxbbaaxxaaaaaa
1oyw_A_921oyw   A94106CLNSTQTREQQLEEE-TTS-HHHHHHbbbaaxxaaaaaa
1qop_A_1531qop   A153165ICPPNADDDLLRQEE-TT--HHHHHHxbxaNpxaaaaaa
1rkd_*_1371rkd   -139151LMQLESPLESVMAEE-SSS-HHHHHHbbbaabpaaaaaa
1ujp_A_1501ujp   A150162LLAPTSTDARIATEE-TT--HHHHHHbbbaapxaaaaaa
2nap_A_1042nap   A107119YGSGQCLTEESYVEE-TTS-HHHHHHbbbaaxxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h16_A_3701h16   A     PG4TETRAETHYLENE GLYCOL F - 386
1kae_A_2381kae   A     MSESELENOMETHIONINE A - 243
1kae_A_2381kae   A     MSESELENOMETHIONINE D - 244
1kae_A_2381kae   A     MSESELENOMETHIONINE S - 245
1kae_A_2381kae   A     MSESELENOMETHIONINE G - 246
1kae_A_2381kae   A     MSESELENOMETHIONINE A - 247
1kae_A_2381kae   A     MSESELENOMETHIONINE T - 248
1kae_A_2381kae   A     MSESELENOMETHIONINE P - 249
1kae_A_2381kae   A     MSESELENOMETHIONINE V - 252
1kae_A_2381kae   A     ZNZINC ION S - 258
1kae_A_2381kae   A     ZNZINC ION Q - 259
1kae_A_2381kae   A     HSOHISTIDINOL Q - 259
1l6r_A_1871l6r   A     CACALCIUM ION P - 191
1l6r_A_1871l6r   A     CACALCIUM ION N - 193
1m2t_A_21m2t   A     GOLGLYCEROL F - 18
1oyw_A_921oyw   A     MSESELENOMETHIONINE C - 94
1oyw_A_921oyw   A     MSESELENOMETHIONINE L - 95
1oyw_A_921oyw   A     MSESELENOMETHIONINE N - 96
1oyw_A_921oyw   A     MSESELENOMETHIONINE Q - 99
1oyw_A_921oyw   A     MSESELENOMETHIONINE R - 101
1oyw_A_921oyw   A     MSESELENOMETHIONINE Q - 103
1oyw_A_921oyw   A     MSESELENOMETHIONINE Q - 104
1oyw_A_921oyw   A     MSESELENOMETHIONINE L - 105
1oyw_A_921oyw   A     MSESELENOMETHIONINE E - 106
1qop_A_1531qop   A     IPLINDOLE-3-PROPANOL PHOSPHATE I - 153
1rkd_*_1371rkd   *     RIBRIBOSE E - 143
2nap_A_1042nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE S - 109
2nap_A_1042nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE Q - 111
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1rkd_*_1371rkd   * RB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE.E - 143

Clusters included in this Subclass
CLUSTER: EH.4.61
CLUSTER: EH.5.132
CLUSTER: EH.6.14
CLUSTER: EH.6.194