Information on SUBCLASS 5.12.1 |
Subclass Accession number: 735
Subclass: 5.12.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 11 Average sequence ID (%) : 12.5 +/- 14.8 Average RMSD (Å) : 0.527 +/- 0.179 Consensus geometry
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Consensus Sequence: | XhpXppXXh |
(φψ)-conformation: | bbpaaalbb |
Pattern: | x | [fitvwy] | [degkns] | [depqrs] | [DEKNQS] | [DEST] | x | [dhnqrw] | [iklv] | [ekqrsty] |
Conservation: | -0.906 | -0.590 | 0.274 | -0.706 | 1.124 | 1.709 | 0.280 | -1.321 | 0.856 | -0.719 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1edh_A_163 | 1edh | A | 164 | 173 | TVNRDTGVIS | EE-TTT-EEE | bbxaaavxxb |
1f00_I_803 | 1f00 | I | 804 | 813 | SVDASSGQVT | EE-TTT-EEE | bbxaaavxbb |
1gqe_A_322 | 1gqe | A | 325 | 334 | SYVLDDSRIK | EEEGGGTEEE | bbxaaalbbb |
1j3b_A_299 | 1j3b | A | 299 | 308 | VVNPESRRVQ | EE-TTT--EE | xbxaaalxxx |
1jm1_A_197 | 1jm1 | A | 200 | 209 | DYDSSTGDIY | EE-TTT-EEE | bbxaaavxbb |
1jof_A_326 | 1jof | A | 326 | 335 | ITDDQEGWLE | EE-SSS-EEE | bbbaaavbbb |
1lur_A_1247 | 1lur | A | 1249 | 1258 | FWSEKSGIEL | EE-TTT-EEE | bbbaaavxbb |
1o6s_B_51 | 1o6s | B | 52 | 61 | IIERETGWLK | EE-TTT-EEE | bbxaaavxxb |
1qqg_A_13 | 1qqg | A | 19 | 28 | LRKPKSMHKR | EE-TTT--EE | bbxaaalxxb |
1ri6_A_290 | 1ri6 | A | 293 | 302 | AAGQKSHHIS | EE-TTT-EEE | bbbaaalbbb |
1v74_A_656 | 1v74 | A | 658 | 667 | YFNPNTMNVV | EE-TTT-EEE | bbbaaavxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gqe_A_322 | 1gqe | A | MSESELENOMETHIONINE | R - 324 |
1gqe_A_322 | 1gqe | A | MSESELENOMETHIONINE | Y - 326 |
1gqe_A_322 | 1gqe | A | MSESELENOMETHIONINE | L - 328 |
1gqe_A_322 | 1gqe | A | MSESELENOMETHIONINE | I - 333 |
1jof_A_326 | 1jof | A | MSESELENOMETHIONINE | I - 326 |
1jof_A_326 | 1jof | A | MSESELENOMETHIONINE | T - 327 |
1jof_A_326 | 1jof | A | MSESELENOMETHIONINE | D - 328 |
1jof_A_326 | 1jof | A | MSESELENOMETHIONINE | D - 329 |
1jof_A_326 | 1jof | A | PINPIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) | E - 331 |
1jof_A_326 | 1jof | A | PINPIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) | W - 333 |
1jof_A_326 | 1jof | A | MSESELENOMETHIONINE | E - 335 |
1jof_A_326 | 1jof | A | MSESELENOMETHIONINE | I - 336 |
1jof_A_326 | 1jof | A | MSESELENOMETHIONINE | Y - 337 |
1jof_A_326 | 1jof | A | MSESELENOMETHIONINE | R - 338 |
1jof_A_326 | 1jof | A | MSESELENOMETHIONINE | W - 339 |
1lur_A_1247 | 1lur | A | MSESELENOMETHIONINE | L - 1247 |
1lur_A_1247 | 1lur | A | MSESELENOMETHIONINE | R - 1248 |
1v74_A_656 | 1v74 | A | 1PEPENTAETHYLENE GLYCOL | Y - 658 |
1v74_A_656 | 1v74 | A | 1PEPENTAETHYLENE GLYCOL | I - 669 |
Clusters included in this Subclass |
CLUSTER: HA.5.52 |
CLUSTER: HA.6.24 |