Information on SUBCLASS 5.13.1 |
Subclass Accession number: 736
Subclass: 5.13.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1 (>75 %) |
Number of loops: 7 Average sequence ID (%) : 8.6 +/- 13.0 Average RMSD (Å) : 0.829 +/- 0.435 Consensus geometry
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Consensus Sequence: | XXpXXXXXh |
(φψ)-conformation: | bbpaabpbb |
Pattern: | [cekqs] | x | [dhks] | x | x | x | x | [gknr] | [afly] | x |
Conservation: | -0.141 | 0.157 | 0.493 | -2.000 | 0.625 | -0.520 | -1.035 | 1.051 | 1.370 | 0.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ais_A_46 | 1ais | A | 48 | 57 | CHLDDPKVAL | EE-SSS--EE | bbxaaxxbbb |
1bo4_A_86 | 1bo4 | A | 96 | 105 | LPKFEQPRSE | EE-SSSS-EE | xxxaabxbbb |
1dfu_P_72 | 1dfu | P | 78 | 87 | QRHPYKPKLQ | EE-SSSS-EE | bbpaabxbxa |
1i7d_A_418 | 1i7d | A | 426 | 435 | ELDIAKGKFV | EE-STT--EE | bbbFaxpbbb |
1jss_A_54 | 1jss | A | 59 | 68 | KPSEEFNGYL | EE-SSSSSEE | bpxaabxbbb |
1k32_A_523 | 1k32 | A | 523 | 532 | SPDRVVLNFS | EE-SSSS-EE | bxxaabxbbb |
1up8_A_511 | 1up8 | A | 512 | 521 | EVDKDEDKLV | EE-SSSSSEE | bxxaabxbxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bo4_A_86 | 1bo4 | A | SPDSPERMIDINE | I - 108 |
1bo4_A_86 | 1bo4 | A | SPDSPERMIDINE | Y - 109 |
1bo4_A_86 | 1bo4 | A | SPDSPERMIDINE | D - 110 |
1bo4_A_86 | 1bo4 | A | COACOENZYME A | L - 111 |
1bo4_A_86 | 1bo4 | A | COACOENZYME A | A - 112 |
1bo4_A_86 | 1bo4 | A | COACOENZYME A | V - 113 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1bo4_A_86 | 1bo4 | A | ACOCOENZYME A BINDING RESIDUES IN MOL A OF NCS-HOMODIMER | L - 111 |
1bo4_A_86 | 1bo4 | A | ACOCOENZYME A BINDING RESIDUES IN MOL A OF NCS-HOMODIMER | V - 113 |
Clusters included in this Subclass |
CLUSTER: HA.6.70 |
CLUSTER: HA.7.11 |