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Information on SUBCLASS 5.14.2
Subclass Accession number: 738
Subclass: 5.14.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 23.8 +/- 19.5
Average RMSD (Å) : 0.800 +/- 0.453

Consensus geometry
d (Å): 9 delta (°): 135-180 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: QXGppXXXp
(φψ)-conformation: bbeapppbb
Pattern: [CGLV]x[ALV][Q][hiv][DG][ADNS][ENY][APT]x[aqt][AET]x
Conservation:-0.902-0.6860.1902.554-0.5621.4450.0390.0690.072-0.545-0.626-0.022-1.026
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1juh_A_2831juh   A283295VVVQIGDYAATELEEEEETTS--EEEbxbbbeaxxpbxb
1juh_A_811juh   A8496LWAQSGNETQQTREEEEETTS--EEEbbbbbeaxxxbbb
1mx1_A_15251mx1   A15251537GYLQIGANTQAAQEEEEEESS-EEEExbbxbeabbbxbb
1pz7_A_1221pz7   A123135GSLQVGNEAPITGEEEEETTS--EEEbbbbbeaxxpxbe
2fbj_H_1992fbj   H202214CSVQHDSNPVQELEEEEETTS--EEEbbbbxeaxpxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1juh_A_811juh   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 83
1juh_A_811juh   A     NAGN-ACETYL-D-GLUCOSAMINE W - 85
1juh_A_811juh   A     NAGN-ACETYL-D-GLUCOSAMINE G - 89
1juh_A_811juh   A     NAGN-ACETYL-D-GLUCOSAMINE N - 90
1juh_A_811juh   A     NAGN-ACETYL-D-GLUCOSAMINE V - 97
1juh_A_2831juh   A     EDO1,2-ETHANEDIOL L - 295
2fbj_H_1992fbj   H     NAGN-ACETYL-D-GLUCOSAMINE S - 203
2fbj_H_1992fbj   H     NAGN-ACETYL-D-GLUCOSAMINE V - 204
2fbj_H_1992fbj   H     NAGN-ACETYL-D-GLUCOSAMINE Q - 205
2fbj_H_1992fbj   H     NAGN-ACETYL-D-GLUCOSAMINE V - 211

Clusters included in this Subclass
CLUSTER: HA.4.74
CLUSTER: HA.6.123