Information on SUBCLASS 4.1.1 |
Subclass Accession number: 74
Subclass: 4.1.1 Type: HA beta-beta hairpin DB: ArchDB-KI |
Number of loops: 58 Average sequence ID (%) : 14.1 +/- 2.7 Average RMSD (Å) : 1.12 +/- 0.60 Consensus geometry
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Consensus Sequence: | hXXXphXX |
(φψ)-conformation: | bbpaagbb |
Pattern: | {ACGILMVW} | x | x | x | x | {DENQSTY} | x | {DEHKNQRSTY} | x | x |
Conservation: | 0.779 | 0.032 | -0.665 | -0.221 | 0.001 | 2.447 | -0.519 | -0.092 | -1.084 | -0.677 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a06_*_34 | 1a06 | - | 37 | 46 | AEDKRTQKLV | EEETTT--EE | bbxaaavxxb |
1a6o_*_162 | 1a6o | - | 163 | 172 | MIDHELRKLR | EEETTTTEEE | xbbaaalbbb |
1a6o_*_97 | 1a6o | - | 101 | 110 | VRDQHSKTPS | EE-TTT--EE | bbxaaavxxb |
1ad5_A_118 | 1ad5 | A | 121 | 130 | ARSLATRKEG | EEETTT--EE | bbxaaavxbe |
1ad5_A_392 | 1ad5 | A | 392 | 401 | ILVSASLVCK | EEE-TT--EE | bbbxaavxxb |
1ak2_*_144 | 1ak2 | - | 144 | 153 | LIHPQSGRSY | EE-TTT--EE | bbxaaavpbb |
1ake_A_123 | 1ake | A | 124 | 133 | RVHAPSGRVY | EEETTTTEEE | bbxaaavxbb |
1aky_*_132 | 1aky | - | 133 | 142 | LIHPASGRSY | EE-TTT--EE | bbxaaNgpbb |
1apm_E_172 | 1apm | E | 172 | 181 | LLIDQQGYIQ | EEE-TTS-EE | bbxxaavxxb |
1apm_E_55 | 1apm | E | 60 | 69 | VKHKESGNHY | EEETTT--EE | bbxaaavxxb |
1aq1_*_133 | 1aq1 | - | 133 | 142 | LLINTEGAIK | EEE-TTS-EE | bbbbaagxbb |
1b38_A_133 | 1b38 | A | 133 | 142 | LLINTEGAIK | EEE-TTS-EE | bbbbaavxbb |
1b6c_B_339 | 1b6c | B | 339 | 348 | ILVKKNGTCC | EEE-TTS-EE | bbbxaavbbb |
1b6c_B_356 | 1b6c | B | 356 | 365 | VRHDSATDTI | EEEETTTTEE | bbbbaaNlbb |
1blx_A_151 | 1blx | A | 151 | 160 | ILVTSSGQIK | EEE-TT--EE | bxbxaavxxb |
1bu6_O_15 | 1bu6 | O | 19 | 28 | VVMDHDANII | EEE-TTS-EE | bbbxaavbxa |
1bu6_O_192 | 1bu6 | O | 192 | 199 | .FNIHTLDW. | .EETTTTEE. | .bxaaalbp. |
1bu6_O_86 | 1bu6 | O | 88 | 97 | VWEKETGKPI | EEETTTTEEE | bbbaaavxxa |
1bx4_A_269 | 1bx4 | A | 272 | 281 | IMATESEVTA | EEE-SS-EEE | bbbbaabbbb |
1byg_A_320 | 1byg | A | 320 | 329 | VLVSEDNVAK | EEE-TTS-EE | bbbxaavbxb |
1c3q_A_172 | 1c3q | A | 173 | 182 | VIADTSHVYT | EEE-SS-EEE | bbbbaabbbb |
1cdk_A_172 | 1cdk | A | 172 | 181 | LLIDQQGYIQ | EEE-TTS-EE | bbbxaavxxb |
1cdk_A_56 | 1cdk | A | 60 | 69 | VKHKETGNHF | EEETTT--EE | bbxaaavxxb |
1ckp_*_133 | 1ckp | - | 133 | 142 | LLINTEGAIK | EEE-TTS-EE | Mbbbaavxbb |
1ckp_*_16 | 1ckp | - | 21 | 30 | ARNKLTGEVV | EEETTT--EE | bbxaaavxxb |
1dvr_A_132 | 1dvr | A | 133 | 142 | LIHPASGRSY | EEETTTTEEE | bbxaaavxbb |
1erk_*_153 | 1erk | - | 153 | 162 | LLLNTTCDLK | EEE-TT--EE | bxbbaavxxb |
1fgk_A_629 | 1fgk | A | 629 | 638 | VLVTEDNVMK | EEE-TT--EE | bbbxaavxxb |
1hcl_*_133 | 1hcl | - | 133 | 142 | LLINTEGAIK | EEE-TTS-EE | bbbbaavxbb |
1hcl_*_17 | 1hcl | - | 21 | 30 | ARNKLTGEVV | EEETTT--EE | bbxaaavxxb |
1ir3_A_1138 | 1ir3 | A | 1138 | 1147 | CMVAHDFTVK | EEE-TT--EE | bbbxaavxxb |
1irk_*_1138 | 1irk | - | 1138 | 1147 | CMVAHDFTVK | EEE-TT--EE | bbbxaavxbb |
1jnk_*_195 | 1jnk | - | 195 | 204 | IVVKSDCTLK | EEE-TTS-EE | bbbbaavxbb |
1jsu_A_133 | 1jsu | A | 133 | 142 | LLINTEGAIK | EEE-TTS-EE | bxbbaagxbb |
1koa_*_5954 | 1koa | - | 5959 | 5968 | VTERATGNNF | EEETTTTEEE | bbxaaavbxb |
1koa_*_6336 | 1koa | - | 6339 | 6348 | RAKNSYGTKE | EEEETTEEEE | bbbbaabbbb |
1kob_A_65 | 1kob | A | 70 | 79 | CVEKATGRVF | EEETTT--EE | bbxaaavxxb |
1p38_*_156 | 1p38 | - | 156 | 165 | LAVNEDCELK | EEE-TT--EE | bxbxaavxbb |
1p38_*_36 | 1p38 | - | 41 | 50 | AFDTKTGHRV | EEETTT--EE | bxxaaavxxb |
1phk_*_155 | 1phk | - | 155 | 164 | ILLDDDMNIK | EEE-TT--EE | bbbxaavxxb |
1pme_*_39 | 1pme | - | 42 | 51 | AYDNVNKVRV | EEETTT-SEE | bbxaaalbxb |
1rkd_*_96 | 1rkd | - | 100 | 109 | IFVNGEGENV | EEE-TTS-EE | bbbxaavxbb |
1tki_A_36 | 1tki | A | 41 | 50 | CVETSSKKTY | EEETTTTEEE | bbxaaavxxb |
1tki_A_83 | 1tki | A | 86 | 95 | SFESMEELVM | EEEETTEEEE | bbbbaabbbb |
1wfc_*_156 | 1wfc | - | 156 | 165 | LAVNEDCELK | EEE-TTS-EE | bbbxaavxbb |
1ydr_E_172 | 1ydr | E | 172 | 181 | LLIDQQGYIQ | EEE-TTS-EE | bbxxaavxxb |
1zak_A_129 | 1zak | A | 130 | 139 | RLDPVTGKIY | EE-TTT--EE | bbxaaagxxb |
1zip_*_127 | 1zip | - | 128 | 137 | RICRNCGATY | EEETTT--EE | bbxaaavpbb |
2ak3_A_126 | 2ak3 | A | 127 | 136 | WIHPGSGRVY | EEETTTTEEE | bbxaaavxbb |
2csn_*_24 | 2csn | - | 29 | 38 | GTNLLNNQQV | EEETTT--EE | bbxaaavxxb |
2eck_A_123 | 2eck | A | 124 | 133 | RVHAPSGRVY | EEETTTTEEE | bbbaaavxbb |
2fgi_A_629 | 2fgi | A | 629 | 638 | VLVTEDNVMK | EEE-TT--EE | bbbxaavxxb |
2ptk_*_118 | 2ptk | - | 121 | 130 | AHSLTTGQTG | EEETTT--EE | bbxaaavxbe |
2ptk_*_199 | 2ptk | - | 204 | 213 | IRKLDSGGFY | EEE-TTS-EE | bxxpaagpbb |
2ptk_*_392 | 2ptk | - | 392 | 401 | ILVGENLVCK | EEE-TTS-EE | bbbbaxlxbb |
2src_*_118 | 2src | - | 121 | 130 | AHSLSTGQTG | EEETTT--EE | bbxaaavxbe |
2src_*_196 | 2src | - | 204 | 213 | IRKLDSGGFY | EEE-SSS-EE | bbbpaaNpbb |
3lck_*_370 | 3lck | - | 370 | 379 | ILVSDTLSCK | EEE-TTS-EE | bbbxaavbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1rkd_*_96 | 1rkd | * | RB3RESIDUES WITHIN VAN DER WAALS DISTANCE OF RIBOSE. | A - 98 |
1rkd_*_96 | 1rkd | * | RB3RESIDUES WITHIN VAN DER WAALS DISTANCE OF RIBOSE. | I - 100 |
1rkd_*_96 | 1rkd | * | RB3RESIDUES WITHIN VAN DER WAALS DISTANCE OF RIBOSE. | I - 110 |
1rkd_*_96 | 1rkd | * | RB3RESIDUES WITHIN VAN DER WAALS DISTANCE OF RIBOSE. | I - 112 |
1zip_*_127 | 1zip | * | ZFZINC FINGER RESIDUES. | C - 130 |
1zip_*_127 | 1zip | * | ZFZINC FINGER RESIDUES. | C - 133 |
Bibliographic annotations |
Clusters included in this Subclass |