Information on SUBCLASS 1.1.13 |
Subclass Accession number: 74
Subclass: 1.1.13 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 4.8 +/- 6.6 Average RMSD (Å) : 0.767 +/- 0.058 Consensus geometry
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Consensus Sequence: | XXphp |
(φψ)-conformation: | aalbp |
Pattern: | [AGY] | [AIY] | x | x | x | [AL] | x | [KPT] | [CKL] | [DEH] | [MVW] | [DEK] | x | x |
Conservation: | -0.357 | -0.357 | -1.119 | -1.576 | -0.967 | 1.002 | -0.662 | 0.252 | -0.510 | 1.775 | 0.709 | 1.623 | 0.088 | 0.100 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dfm_A_50 | 1dfm | A | 56 | 69 | YIKDELVPKHWKNN | HHHHHHGGGT-EEE | aaaaaaaaavxxbl |
1h70_A_28 | 1h70 | A | 37 | 50 | AYIRALQTCDVDIT | HHHHHHTTSS-EEE | aaaaaaaaalbxbb |
1lsh_B_1473 | 1lsh | B | 1473 | 1486 | GAPVIASKLEMEIM | HHHHHHHTTT-EEE | aaaaaaaaalbxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | G - 52 |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | T - 53 |
1dfm_A_50 | 1dfm | A | CACALCIUM ION | N - 54 |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | Y - 56 |
1dfm_A_50 | 1dfm | A | CACALCIUM ION | Y - 56 |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | I - 57 |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | P - 71 |
1lsh_B_1473 | 1lsh | B | PLDDIUNDECYL PHOSPHATIDYL CHOLINE | A - 1474 |
1lsh_B_1473 | 1lsh | B | UPLUNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID | A - 1474 |
1lsh_B_1473 | 1lsh | B | PLDDIUNDECYL PHOSPHATIDYL CHOLINE | I - 1477 |
1lsh_B_1473 | 1lsh | B | UPLUNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID | I - 1477 |
1lsh_B_1473 | 1lsh | B | PLDDIUNDECYL PHOSPHATIDYL CHOLINE | A - 1478 |
1lsh_B_1473 | 1lsh | B | PLDDIUNDECYL PHOSPHATIDYL CHOLINE | L - 1481 |
1lsh_B_1473 | 1lsh | B | PLDDIUNDECYL PHOSPHATIDYL CHOLINE | M - 1483 |
Clusters included in this Subclass |
CLUSTER: HE.4.137 |