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Information on SUBCLASS 1.1.13
Subclass Accession number: 74
Subclass: 1.1.13 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 4.8 +/- 6.6
Average RMSD (Å) : 0.767 +/- 0.058

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXphp
(φψ)-conformation: aalbp
Pattern: [AGY][AIY]xxx[AL]x[KPT][CKL][DEH][MVW][DEK]xx
Conservation:-0.357-0.357-1.119-1.576-0.9671.002-0.6620.252-0.5101.7750.7091.6230.0880.100
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dfm_A_501dfm   A5669YIKDELVPKHWKNNHHHHHHGGGT-EEEaaaaaaaaavxxbl
1h70_A_281h70   A3750AYIRALQTCDVDITHHHHHHTTSS-EEEaaaaaaaaalbxbb
1lsh_B_14731lsh   B14731486GAPVIASKLEMEIMHHHHHHHTTT-EEEaaaaaaaaalbxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dfm_A_501dfm   A     MSESELENOMETHIONINE G - 52
1dfm_A_501dfm   A     MSESELENOMETHIONINE T - 53
1dfm_A_501dfm   A     CACALCIUM ION N - 54
1dfm_A_501dfm   A     MSESELENOMETHIONINE Y - 56
1dfm_A_501dfm   A     CACALCIUM ION Y - 56
1dfm_A_501dfm   A     MSESELENOMETHIONINE I - 57
1dfm_A_501dfm   A     MSESELENOMETHIONINE P - 71
1lsh_B_14731lsh   B     PLDDIUNDECYL PHOSPHATIDYL CHOLINE A - 1474
1lsh_B_14731lsh   B     UPLUNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID A - 1474
1lsh_B_14731lsh   B     PLDDIUNDECYL PHOSPHATIDYL CHOLINE I - 1477
1lsh_B_14731lsh   B     UPLUNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID I - 1477
1lsh_B_14731lsh   B     PLDDIUNDECYL PHOSPHATIDYL CHOLINE A - 1478
1lsh_B_14731lsh   B     PLDDIUNDECYL PHOSPHATIDYL CHOLINE L - 1481
1lsh_B_14731lsh   B     PLDDIUNDECYL PHOSPHATIDYL CHOLINE M - 1483

Clusters included in this Subclass
CLUSTER: HE.4.137