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Information on SUBCLASS 5.6.2
Subclass Accession number: 7461
Subclass: 5.6.2 PSSM
Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 32.5 +/- 22.9
Average RMSD (Å) : 0.462 +/- 0.092

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XGXXhhGKp
(φψ)-conformation: bepplagaa
Pattern: [afilv][ILM]x[G]xx[agr][ACITV][G][KM][GST][ET]x[acgstv][knqr]x[ILV][aimvy][AEKR]
Conservation:-0.5210.559-0.7652.263-0.995-0.998-0.516-0.3612.2630.7860.1260.821-0.749-0.781-0.352-1.0090.641-0.4220.012
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e4v_A_21e4v   A422ILLGAPVAGKGTQAQFIMEEEEESTTSSHHHHHHHHHHxbbepwlavaaaaaaaaaa
1e6c_A_61e6c   A624FMVGARGCGMTTVGRELAREEEES-TTSSHHHHHHHHHxbbexxvavaaaaaaaaaa
1fp6_A_31fp6   A624AIYGKGGIGKSTTTQNLVAEEEESTTSSHHHHHHHHHHbbbexxvagaaaaaaaaaa
1jag_A_391jag   A4260SIEGNIAVGKSTFVKLLTKEEEE-TTSSHHHHHHHHHHbxbexpvagaaaaaaaaaa
1ko7_A_1451ko7   A148166LITGDSGIGKSETALELIKEEEESTTSSHHHHHHHHHHbxbexpvagaaaaaaaaaa
1nn5_A_81nn5   A1028VLEGVDRAGKSTQSRKLVEEEEESTTSSHHHHHHHHHHbbbexpvagaaaaaaaaaa
3tmk_A_73tmk   A927LIEGLDRTGKTTQCNILYKEEEE-SSSSHHHHHHHHHHbbbexxlavaaaaaaaaaa
4tmk_A_54tmk   A725VIEGLEGAGKTTARNVVVEEEEE-TTS-HHHHHHHHHHbbbexxvavaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e4v_A_21e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 7
1e4v_A_21e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE A - 8
1e4v_A_21e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE P - 9
1e4v_A_21e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE V - 10
1e4v_A_21e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE A - 11
1e4v_A_21e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 12
1e4v_A_21e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE K - 13
1e4v_A_21e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 14
1e4v_A_21e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE T - 15
1e4v_A_21e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE Q - 16
1e6c_A_61e6c   A     PO4PHOSPHATE ION A - 10
1e6c_A_61e6c   A     MPD2-METHYL-2,4-PENTANEDIOL A - 10
1e6c_A_61e6c   A     PO4PHOSPHATE ION R - 11
1e6c_A_61e6c   A     MPD2-METHYL-2,4-PENTANEDIOL R - 11
1e6c_A_61e6c   A     PO4PHOSPHATE ION G - 12
1e6c_A_61e6c   A     MPD2-METHYL-2,4-PENTANEDIOL G - 12
1e6c_A_61e6c   A     PO4PHOSPHATE ION C - 13
1e6c_A_61e6c   A     MPD2-METHYL-2,4-PENTANEDIOL C - 13
1e6c_A_61e6c   A     PO4PHOSPHATE ION G - 14
1e6c_A_61e6c   A     PO4PHOSPHATE ION M - 15
1e6c_A_61e6c   A     PO4PHOSPHATE ION T - 16
1e6c_A_61e6c   A     PO4PHOSPHATE ION T - 17
1fp6_A_31fp6   A     ADPADENOSINE-5'-DIPHOSPHATE G - 9
1fp6_A_31fp6   A     ADPADENOSINE-5'-DIPHOSPHATE K - 10
1fp6_A_31fp6   A     ADPADENOSINE-5'-DIPHOSPHATE G - 11
1fp6_A_31fp6   A     ADPADENOSINE-5'-DIPHOSPHATE G - 12
1fp6_A_31fp6   A     ADPADENOSINE-5'-DIPHOSPHATE I - 13
1fp6_A_31fp6   A     ADPADENOSINE-5'-DIPHOSPHATE G - 14
1fp6_A_31fp6   A     MGMAGNESIUM ION K - 15
1fp6_A_31fp6   A     ADPADENOSINE-5'-DIPHOSPHATE K - 15
1fp6_A_31fp6   A     MGMAGNESIUM ION S - 16
1fp6_A_31fp6   A     ADPADENOSINE-5'-DIPHOSPHATE S - 16
1fp6_A_31fp6   A     MGMAGNESIUM ION T - 17
1fp6_A_31fp6   A     ADPADENOSINE-5'-DIPHOSPHATE T - 17
1fp6_A_31fp6   A     ADPADENOSINE-5'-DIPHOSPHATE T - 18
1jag_A_391jag   A     ATPADENOSINE-5'-TRIPHOSPHATE G - 45
1jag_A_391jag   A     ATPADENOSINE-5'-TRIPHOSPHATE N - 46
1jag_A_391jag   A     ATPADENOSINE-5'-TRIPHOSPHATE I - 47
1jag_A_391jag   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 48
1jag_A_391jag   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 49
1jag_A_391jag   A     ATPADENOSINE-5'-TRIPHOSPHATE G - 50
1jag_A_391jag   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 51
1jag_A_391jag   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 52
1jag_A_391jag   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 53
1ko7_A_1451ko7   A     PO4PHOSPHATE ION G - 151
1ko7_A_1451ko7   A     PO4PHOSPHATE ION D - 152
1ko7_A_1451ko7   A     PO4PHOSPHATE ION S - 153
1ko7_A_1451ko7   A     PO4PHOSPHATE ION G - 154
1ko7_A_1451ko7   A     PO4PHOSPHATE ION I - 155
1ko7_A_1451ko7   A     PO4PHOSPHATE ION G - 156
1ko7_A_1451ko7   A     PO4PHOSPHATE ION K - 157
1ko7_A_1451ko7   A     PO4PHOSPHATE ION S - 158
1ko7_A_1451ko7   A     PO4PHOSPHATE ION E - 159
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 13
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 14
1nn5_A_81nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE D - 15
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 15
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER R - 16
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 17
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 18
1nn5_A_81nn5   A     MGMAGNESIUM ION K - 19
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 19
1nn5_A_81nn5   A     MGMAGNESIUM ION S - 20
1nn5_A_81nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE S - 20
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER S - 20
1nn5_A_81nn5   A     MGMAGNESIUM ION T - 21
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 21
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Q - 22
1nn5_A_81nn5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER R - 24
3tmk_A_73tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE G - 12
3tmk_A_73tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE L - 13
3tmk_A_73tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE D - 14
3tmk_A_73tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE R - 15
3tmk_A_73tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 16
3tmk_A_73tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE G - 17
3tmk_A_73tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE K - 18
3tmk_A_73tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 19
3tmk_A_73tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 20
3tmk_A_73tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE Q - 21
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE G - 10
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE L - 11
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE E - 12
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE G - 13
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE A - 14
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE G - 15
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE K - 16
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 17
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 18
4tmk_A_54tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE A - 19
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e4v_A_21e4v   A AC1AP5 BINDING SITE FOR CHAIN AP - 9
1e4v_A_21e4v   A AC1AP5 BINDING SITE FOR CHAIN AA - 11
1e4v_A_21e4v   A AC1AP5 BINDING SITE FOR CHAIN AG - 12
1e4v_A_21e4v   A AC1AP5 BINDING SITE FOR CHAIN AK - 13
1e4v_A_21e4v   A AC1AP5 BINDING SITE FOR CHAIN AG - 14
1e4v_A_21e4v   A AC1AP5 BINDING SITE FOR CHAIN AT - 15
1e6c_A_61e6c   A POACHAIN A WALKER TYPE A MOTIF FORMING THE P-LOOP WHICH IS THE BINDING SITE FOR THE PHOSPHATES OF ATP.G - 9
1e6c_A_61e6c   A POACHAIN A WALKER TYPE A MOTIF FORMING THE P-LOOP WHICH IS THE BINDING SITE FOR THE PHOSPHATES OF ATP.M - 15
1e6c_A_61e6c   A POACHAIN A WALKER TYPE A MOTIF FORMING THE P-LOOP WHICH IS THE BINDING SITE FOR THE PHOSPHATES OF ATP.T - 16

Clusters included in this Subclass
CLUSTER: EH.5.37