ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.12.1

Subclass Accession number: 7470
Subclass: 5.12.1

PSSM

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 36.9 +/- 25.8
Average RMSD (Å) : 0.390 +/- 0.152

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 135-180

rho (°): 270-315

Consensus Sequence:	XphXXccEX
(φψ)-conformation:	bbppplbaa

Pattern:	[FVY]	[AEGQRT]	[enqr]	[ILV]	[APQT]	x	x	[DKNR]	[E]	[degkqs]	[ANSV]	[LM]	x	[EKNRSTY]	[AS]	[IV]
Conservation:	0.204	-0.969	-0.680	0.815	-0.527	-1.259	-0.222	0.284	2.175	-1.093	-0.369	1.114	-0.766	-0.830	0.889	1.237

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cqd_A_111	1cqd	A	112	127	YENVPSHNEQSLQKAV	EEE--SS-HHHHHHHH	bbxxpxlbaaaaaaaa
1fh0_A_112	1fh0	A	112	127	FTVVAPGKEKALMKAV	EEE--TT-HHHHHHHH	bbxxppvxaaaaaaaa
1gec_E_109	1gec	E	110	125	VGRVQSNNEGSLLNAI	EEE--SS-HHHHHHHH	bbbxxxlbaaaaaaaa
1iwd_A_108	1iwd	A	109	124	FQRVTRNNESALQSAV	EEE--TT-HHHHHHHH	bbbxpxlbaaaaaaaa
1khq_A_109	1khq	A	110	125	VRQVQPYNEGALLYSI	EEE--TT-HHHHHHHH	bbbxpxlbaaaaaaaa
1mem_A_110	1mem	A	110	125	YREIPEGNEKALKRAV	EEE--TT-HHHHHHHH	bbbxppvxaaaaaaaa
1nqc_A_112	1nqc	A	113	128	YTELPYGREDVLKEAV	EEE--TT-HHHHHHHH	bbbxxpvxaaaaaaaa
1ppo_*_109	1ppo	-	110	125	VGRVQPNNEGNLLNAI	EEE--SS-HHHHHHHH	bxbxxxvbaaaaaaaa
2act_*_112	2act	-	113	128	YENVPYNNEWALQTAV	EEE--TT-HHHHHHHH	bbxxpxlbaaaaaaaa
8pch_A_107	8pch	A	110	125	VANITMNDEEAMVEAV	EEE--TT-HHHHHHHH	bbbxppvxaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gec_E_109	1gec	E	CBZCARBOBENZOXY GROUP	R - 112
8pch_A_107	8pch	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 110
8pch_A_107	8pch	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 111
8pch_A_107	8pch	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 112

Clusters included in this Subclass

CLUSTER: EH.5.20