ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.13.1

Subclass Accession number: 7538
Subclass: 6.13.1

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 6

Average sequence ID (%) : 31.5 +/- 22.1
Average RMSD (Å) : 0.550 +/- 0.176

Consensus geometry

d (Å): 19

delta (°): 0-45

theta (°): 90-135

rho (°): 180-225

Consensus Sequence:	phhEhXLcpp
(φψ)-conformation:	bbppppppaa

Pattern:	[G]	[ILV]	[EKR]	[EKQ]	[IV]	[ILV]	[ES]	[ilw]	[DEPQ]	[L]	[DNS]	[ADEKS]	[DEY]	[E]	[iklm]	[adkn]	[akl]	[FLM]	[dhnqr]	[adek]	[AS]	[AI]	[AEK]	[aekt]	[ILTV]	[KRS]	[ADKRS]	x	[ckl]
Conservation:	2.692	0.607	0.438	0.547	1.034	0.627	0.789	-1.009	-0.238	1.365	0.439	-0.628	-0.060	2.029	-0.975	-1.409	-0.954	0.211	-0.957	-0.784	0.416	0.171	-0.448	-1.189	-0.180	0.331	-0.799	-1.001	-1.067

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ez4_A_297	1ez4	A	297	325	GLKQIIESPLSADELKKMQDSAATLKKVL	EEEEE------HHHHHHHHHHHHHHHHHH	exabxbxpxppaaaaaaaaaaaaaaaaaa
1hye_A_279	1hye	A	279	307	GIEEVVSIELDKDEIIAFRKSAEIIKKYC	EEEEE------HHHHHHHHHHHHHHHHHH	exaexxxbxbxaaaaaaaaaaaaaaaaaa
1ldg_*_297	1ldg	-	297	325	GVEQVIELQLNSEEKAKFDEAIAETKRMK	EEEEE------HHHHHHHHHHHHHHHHHH	exabbxbxxxxaaaaaaaaaaaaaaaaaa
1ldn_A_297	1ldn	A	297	325	GIREVIEIELNDDEKNRFHHSAATLKSVL	EEEEE------HHHHHHHHHHHHHHHHHH	exabxbxxbbxaaaaaaaaaaaaaaaaaa
1o6z_A_297	1o6z	A	297	325	GVEEIVEWDLDDYEQDLMADAAEKLSDQY	EEEEE------HHHHHHHHHHHHHHHHHH	exabxxxpxxxaaaaaaaaaaaaaaaaaa
1ur5_A_275	1ur5	A	275	303	GVEKILELPLNEEEMALLNASAKAVRATL	EEEEE------HHHHHHHHHHHHHHHHHH	exabbxbxwxxaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1ur5_A_275	1ur5	A	AC7CD BINDING SITE FOR CHAIN A	E - 277

Clusters included in this Subclass