ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.17.1

Subclass Accession number: 7542
Subclass: 6.17.1

PSSM

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 27.8 +/- 27.2
Average RMSD (Å) : 0.750 +/- 0.436

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	hhXXhhXGXh
(φψ)-conformation:	bwaalppgaa

Pattern:	[CFVY]	[IVY]	[AF]	[CP]	[AS]	[AD]	[AGM]	[GIM]	x	[G]	[FQR]	[AIV]	x	[ADP]	[AI]	[AKR]	x	[AG]	[LV]	x	x
Conservation:	-0.370	0.260	-0.052	0.871	0.799	-0.138	-0.657	-0.779	-0.244	3.353	-0.607	0.195	-1.324	-0.543	0.115	0.094	-0.895	0.815	0.799	-0.751	-0.942

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bfd_*_395	1bfd	-	395	415	YYFCAAGGLGFALPAAIGVQL	EEE-TT--SS-HHHHHHHHHH	bbbpaavxxgaaaaaaaaaaa
1gzg_A_171	1gzg	A	171	191	VVAPSDMMDGRIGAIREALES	EEEE-S--TTHHHHHHHHHHH	bbbwaalxxvaaaaaaaaaaa
1h7n_A_175	1h7n	A	175	195	CVAPSDMIDGRIRDIKRGLIN	EEEE----TTHHHHHHHHHHH	bbbwaavxpvaaaaaaaaaaa
1l6s_A_160	1l6s	A	160	180	FIAPSAAMDGQVQAIRQALDA	EEEE-S--TTHHHHHHHHHHH	bbbwaalbxvaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bfd_*_395	1bfd	*	TPPTHIAMINE DIPHOSPHATE	G - 401
1bfd_*_395	1bfd	*	TPPTHIAMINE DIPHOSPHATE	G - 402
1bfd_*_395	1bfd	*	TPPTHIAMINE DIPHOSPHATE	L - 403
1bfd_*_395	1bfd	*	TPPTHIAMINE DIPHOSPHATE	G - 404
1gzg_A_171	1gzg	A	LAF5-FLUOROLEVULINIC ACID	S - 175
1gzg_A_171	1gzg	A	LAF5-FLUOROLEVULINIC ACID	D - 176
1gzg_A_171	1gzg	A	MGMAGNESIUM ION	M - 177
1gzg_A_171	1gzg	A	MGMAGNESIUM ION	M - 178
1gzg_A_171	1gzg	A	MGMAGNESIUM ION	D - 179
1gzg_A_171	1gzg	A	MGMAGNESIUM ION	G - 180
1gzg_A_171	1gzg	A	MGMAGNESIUM ION	R - 181
1h7n_A_175	1h7n	A	SHFLAEVULINIC ACID	S - 179
1h7n_A_175	1h7n	A	ZNZINC ION	S - 179
1h7n_A_175	1h7n	A	ZNZINC ION	D - 180
1l6s_A_160	1l6s	A	ZNZINC ION	S - 164
1l6s_A_160	1l6s	A	DSB4,7-DIOXOSEBACIC ACID	S - 164
1l6s_A_160	1l6s	A	ZNZINC ION	A - 165
1l6s_A_160	1l6s	A	MGMAGNESIUM ION	A - 166
1l6s_A_160	1l6s	A	MGMAGNESIUM ION	M - 167
1l6s_A_160	1l6s	A	MGMAGNESIUM ION	D - 168
1l6s_A_160	1l6s	A	MGMAGNESIUM ION	G - 169
1l6s_A_160	1l6s	A	MGMAGNESIUM ION	Q - 170

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gzg_A_171	1gzg	A	LA2LAF BINDING SITE FOR CHAIN A	S - 175
1gzg_A_171	1gzg	A	MGAMG BINDING SITE FOR CHAIN A	R - 181

Clusters included in this Subclass

CLUSTER: EH.7.68