ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.37.1

Subclass Accession number: 7562
Subclass: 6.37.1

PSSM

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 3

Average sequence ID (%) : 42.0 +/- 12.5
Average RMSD (Å) : 0.300 +/- 0.100

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hGpFDPhppG
(φψ)-conformation:	pealbwpbaa

Pattern:	x	[AG]	[IV]	[CFY]	[GP]	[G]	[ST]	[F]	[D]	[P]	[IPV]	[HT]	[NY]	[G]	[H]	[IL]	x	[IM]	[AIV]	[KNT]	[ER]	[AGV]	[ALT]
Conservation:	-1.080	-0.372	0.150	-0.454	-0.317	1.291	-0.107	1.291	1.291	1.752	-0.915	-0.501	-0.383	1.291	2.214	-0.065	-1.075	-0.224	-0.659	-0.761	-0.280	-1.069	-1.018

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1kam_A_3	1kam	A	4	26	IGIFGGTFDPPHNGHLLMANEVL	EEEEEE--SS--HHHHHHHHHHH	bxxbxealbwwbaaaaaaaaaaa
1o6b_A_4	1o6b	A	4	26	IAVCPGSFDPVTYGHLDIIKRGA	EEEEEE--TT--HHHHHHHHHHH	bbbbxealbwpbaaaaaaaaaaa
1qjc_A_4	1qjc	A	4	26	RAIYPGTFDPITNGHIDIVTRAT	EEEEEE--TT--HHHHHHHHHHH	bbbbxealbwxbaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1o6b_A_4	1o6b	A	MSESELENOMETHIONINE	C - 7
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	C - 7
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	P - 8
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	G - 9
1o6b_A_4	1o6b	A	PO4PHOSPHATE ION	S - 10
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 10
1o6b_A_4	1o6b	A	PO4PHOSPHATE ION	F - 11
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	F - 11
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	D - 12
1o6b_A_4	1o6b	A	PO4PHOSPHATE ION	T - 15
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	T - 15
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	Y - 16
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	G - 17
1o6b_A_4	1o6b	A	PO4PHOSPHATE ION	H - 18
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	H - 18
1o6b_A_4	1o6b	A	MSESELENOMETHIONINE	D - 20
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	D - 20
1o6b_A_4	1o6b	A	MSESELENOMETHIONINE	I - 21
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	I - 21
1o6b_A_4	1o6b	A	MSESELENOMETHIONINE	I - 22
1o6b_A_4	1o6b	A	MSESELENOMETHIONINE	R - 24
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	R - 24
1o6b_A_4	1o6b	A	MSESELENOMETHIONINE	G - 25

Clusters included in this Subclass

CLUSTER: EH.5.235