ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 8.4.1

Subclass Accession number: 7610
Subclass: 8.4.1

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 6

Average sequence ID (%) : 38.8 +/- 23.5
Average RMSD (Å) : 0.383 +/- 0.147

Consensus geometry

d (Å): 25

delta (°): 45-90

theta (°): 45-90

rho (°): 0-45

Consensus Sequence:	pXXQGhpNLXXp
(φψ)-conformation:	bpaaepbbbpaa

Pattern:	x	[fhv]	[FWY]	[CV]	[KQR]	[FVY]	[H]	[FIWY]	[ik]	[CPST]	x	[AQ]	[G]	[IKV]	[hk]	[NS]	[L]	[dstv]	x	[DEK]	[DE]	[AV]	[AEQT]	[AKQR]	[ILV]	[aqst]	[GQS]	[EKRS]
Conservation:	-1.277	-0.831	1.054	0.091	0.328	0.321	3.055	0.076	-0.412	-0.709	-1.066	0.180	1.989	-0.408	-0.425	0.883	0.923	-1.031	-1.652	0.167	0.890	0.119	-0.734	-0.320	0.216	-0.872	-0.221	-0.334

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a4e_A_226	1a4e	A	226	253	WHYVQVHIKTDQGIKNLTIEEATKIAGS	EEEEEEEEEESS---B--HHHHHHHHHH	bbxbbbbbxxaaexbbbxaaaaaaaaaa
1dgf_A_229	1dgf	A	229	256	AVYCKFHYKTDQGIKNLSVEDAARLSQE	EEEEEEEEEETT---B--HHHHHHHHHH	bbxbbbbbxxaaexbbbxaaaaaaaaaa
1e93_A_208	1e93	A	208	235	RFWVKFHFRCQQGIKNLMDDEAEALVGK	EEEEEEEEEETT---B--HHHHHHHHHH	bbxbbbbbxxaaexbbbxaaaaaaaaaa
1gwe_A_214	1gwe	A	214	241	KHWVKYHFISQQGVHNLSNDEATKIAGE	EEEEEEEEEETT---B--HHHHHHHHHH	bbxbbbbbxxaaebbbbxaaaaaaaaaa
1m7s_A_231	1m7s	A	231	258	VHYVKFHWKSLQGIKNLDPKEVAQVQSK	EEEEEEEEEETT---B--HHHHHHHHHH	bbxbbbbxxxaaebbbxxaaaaaaaaaa
1p80_A_286	1p80	A	286	313	ATFVRFHWKPLAGKASLVWDEAQKLTGR	EEEEEEEEEETT---B--HHHHHHHHHH	bbxbbxbbbxaaexbbxbaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dgf_A_229	1dgf	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	H - 235
1dgf_A_229	1dgf	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	K - 237
1dgf_A_229	1dgf	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	I - 242

Clusters included in this Subclass