Logo
Information on SUBCLASS 6.6.1
Subclass Accession number: 770
Subclass: 6.6.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 4.1 (>75 %)  
GO : GO:0016829 (>75 %)  GO:0016830 (>75 %)  
 Number of loops: 14

Average sequence ID (%) : 6.7 +/- 10.0
Average RMSD (Å) : 1.257 +/- 0.386

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: hXXXXpXXXX
(φψ)-conformation: bbabaababb
Pattern: x[acilpvy]xxx[dgnpstv][DEKPRS][EGKNRST]x[dnprst]xxxxx
Conservation:-1.0000.420-0.626-0.454-0.9480.3562.0081.890-0.561-0.538-0.731-0.158-0.658-1.000-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a1i_A_1051a1i   A105116.YACPVESCDRRF...EE--STT---EE...bxxaxaabaxbb..
1bht_A_1881bht   A188200WCFTSNPEVRYEV..EEEBS-TT-SEEE..bbxxaxaababbx..
1dok_A_251dok   A2842YRRITSSKCPKEAVIEEEE--TTSSS-EEEbbxxapaaxabxbbb
1gvh_A_1881gvh   A190204GVWLKPEGFPHQEIREEEE--TT-SS-EEEbbxbawaaxwbxbbb
1i71_A_601i71   A6072WCYTMDPSVRWEY..EEEBSSTT--EEE..bbxbaxaababbx..
1jks_A_1451jks   A145158.IMLLDRNVPKPRIK.EEES-SSSSS--EE.bbxabaababpxbb
1jlx_A_671jlx   A6781YLVRWSPNHYWITASEEEESSTT--BEEEExxbxabaabaxxbxN
1k32_A_4601k32   A465479FPLKHGETDGYVMQAEEE-SSTT-S--EEEbxbbabaaxabxxbb
1kob_A_1801kob   A180192.IMCETKKASSVKI..EEESSTT---EEE..bbxabaaxabbbx.
1lf6_A_921lf6   A96110KVEKFTDKSLGYKLVEEEESSTT---EEEEbbbxabaababbbbb
1qla_A_5621qla   A565579LASWPNPEQTLPTLEEEE--STT-SS-EEEbbbbabaaxabxxbb
1tki_A_1501tki   A150162.IIYQTRRSSTIKI..EEESSSS---EEE..bbxabaaxaxbbx.
1uc2_A_121uc2   A1428EIPKFDKRMRVPGRVEE---STT-SS-EEEbbxxabaaxabxbbb
2pva_A_382pva   A3848..IRLLEKENVVI....EES-SSS--EE....bxabaabaxbb..
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a1i_A_1051a1i   A     ZNZINC ION C - 107
1a1i_A_1051a1i   A     ZNZINC ION P - 108
1a1i_A_1051a1i   A     ZNZINC ION V - 109
1a1i_A_1051a1i   A     ZNZINC ION C - 112
1a1i_A_1051a1i   A     ZNZINC ION D - 113
1a1i_A_1051a1i   A     ZNZINC ION R - 114
1bht_A_1881bht   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID W - 188
1bht_A_1881bht   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID F - 190
1bht_A_1881bht   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID R - 197
1bht_A_1881bht   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID Y - 198
1bht_A_1881bht   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID V - 200
1gvh_A_1881gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 188
1gvh_A_1881gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 203
1gvh_A_1881gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 204
1gvh_A_1881gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 204
1gvh_A_1881gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE Q - 205
1gvh_A_1881gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 206
1gvh_A_1881gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 207
1jlx_A_671jlx   A     NGAN-ACETYL-D-GALACTOSAMINE W - 71
1jlx_A_671jlx   A     GALD-GALACTOSE N - 74
1jlx_A_671jlx   A     NGAN-ACETYL-D-GALACTOSAMINE N - 74
1jlx_A_671jlx   A     GALD-GALACTOSE H - 75
1jlx_A_671jlx   A     NGAN-ACETYL-D-GALACTOSAMINE H - 75
1jlx_A_671jlx   A     NGAN-ACETYL-D-GALACTOSAMINE Y - 76
1jlx_A_671jlx   A     MBNTOLUENE Y - 76
1jlx_A_671jlx   A     NGAN-ACETYL-D-GALACTOSAMINE W - 77
1jlx_A_671jlx   A     MBNTOLUENE W - 77
1uc2_A_121uc2   A     SUCSUCROSE K - 17
1uc2_A_121uc2   A     SUCSUCROSE R - 23
1uc2_A_121uc2   A     SUCSUCROSE V - 24
1uc2_A_121uc2   A     SUCSUCROSE P - 25
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gvh_A_1881gvh   A AC1FAD BINDING SITE FOR CHAIN AY - 188
1gvh_A_1881gvh   A AC3NA BINDING SITE FOR CHAIN AQ - 201
1gvh_A_1881gvh   A AC3NA BINDING SITE FOR CHAIN AE - 202
1gvh_A_1881gvh   A AC1FAD BINDING SITE FOR CHAIN AR - 204
1gvh_A_1881gvh   A AC1FAD BINDING SITE FOR CHAIN AQ - 205
1gvh_A_1881gvh   A AC1FAD BINDING SITE FOR CHAIN AY - 206
1gvh_A_1881gvh   A AC1FAD BINDING SITE FOR CHAIN AS - 207
1jlx_A_671jlx   A S1CARBOHYDRATE BINDING SITE.N - 74
1jlx_A_671jlx   A S1CARBOHYDRATE BINDING SITE.H - 75

Clusters included in this Subclass
CLUSTER: HA.7.17
CLUSTER: HA.8.3
CLUSTER: HA.9.8