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PDB code:

Information on SUBCLASS 2.2.4

Subclass Accession number: 7738 Subclass: 2.2.4 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 26 Average sequence ID (%) : 7.4 +/- 11.8 Average RMSD (Å) : 0.423 +/- 0.225 Consensus geometry d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ava_A_352	1ava	A	356	363	EADADLYL	EEETTEEE	bbbaabbb
1c7s_A_289	1c7s	A	292	299	KIGKKEAQ	EE-SS-EE	bbbaabbb
1c7s_A_377	1c7s	A	377	382	.SDDEGW.	.EETTEE.	.bbaabb.
1cbk_A_106	1cbk	A	106	113	IQNERLTI	EESSS-EE	bbbaabbb
1ezv_A_91	1ezv	A	95	102	NISRDFQS	EE-SS-EE	bxbaabbb
1f9y_A_106	1f9y	A	106	113	INTERLTV	EE-SS-EE	bbbaabbb
1gpj_A_41	1gpj	A	45	52	LQTSNRVE	EEETTEEE	bbbaabbb
1h1w_A_82	1h1w	A	89	96	GEGSFSTV	EE-SS-EE	bbbaabbx
1iw7_C_601	1iw7	C	605	612	KVDGNRIV	EE-SSBEE	bbxaabbx
1iy9_A_14	1iy9	A	27	34	EQTEFQHL	EE-SS-EE	bxxaabxx
1jp4_A_38	1jp4	A	40	47	KTSATDLQ	EEETTEEE	Fabaabbb
1ju3_A_293	1ju3	A	293	298	.RNADRK.	.EETTEE.	.bbaabb.
1k0e_A_63	1k0e	A	66	73	VSESEKRT	EEETTEEE	bbbaabbb
1k32_A_126	1k32	A	127	133	KSTGRRM.	EEETTEE.	xbbaabx.
1k38_A_193	1k38	A	195	202	EAGRNWIL	EEETTEEE	bbbaabbb
1lwj_A_403	1lwj	A	408	415	LYDDQHSL	EEETTEEE	bbbaabbb
1mbm_A_100	1mbm	A	105	112	LLSGEVCL	EE-SS-EE	xbbaabbb
1mhm_A_75	1mhm	A	76	83	FVYSYKII	EEETTEEE	bbbaabbb
1nqk_A_148	1nqk	A	150	157	FNGKHIHV	EE-SS-EE	bbbaaxbb
1or8_A_329	1or8	A	337	344	FKGQLCEL	EE-SS-EE	bbbaabbb
1p6w_A_354	1p6w	A	358	365	MHEGDAYV	EEETTEEE	bbbaabbb
1svb_*_363	1svb	-	363	369	TIENNGG.	EEETTEE.	bbxaabe.
2aaa_*_385	2aaa	-	388	395	YTDSNTIA	EEETTEEE	bbbaabbb
2pva_A_288	2pva	A	291	298	FKLYDNSR	EEETTEEE	bbbaabax
7taa_*_385	7taa	-	388	395	YKDDTTIA	EEETTEEE	bbbaabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1c7s_A_377	1c7s	A	CBSDI(N-ACETYL-D-GLUCOSAMINE)	D - 378
1f9y_A_106	1f9y	A	APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER	E - 109
1f9y_A_106	1f9y	A	APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER	R - 110
1f9y_A_106	1f9y	A	APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER	L - 111
1f9y_A_106	1f9y	A	ACTACETATE ION	T - 112
1f9y_A_106	1f9y	A	APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER	T - 112
1f9y_A_106	1f9y	A	APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER	V - 113
1gpj_A_41	1gpj	A	GMC(2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETHYLAMINO)-9H-PURIN-9-YL]-5-(HYDROXYMETHYL)TETRAHYDRO-3-FURANOL	T - 47
1gpj_A_41	1gpj	A	GLUGLUTAMIC ACID	T - 47
1gpj_A_41	1gpj	A	GMC(2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETHYLAMINO)-9H-PURIN-9-YL]-5-(HYDROXYMETHYL)TETRAHYDRO-3-FURANOL	S - 48
1gpj_A_41	1gpj	A	GLUGLUTAMIC ACID	S - 48
1gpj_A_41	1gpj	A	GMC(2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETHYLAMINO)-9H-PURIN-9-YL]-5-(HYDROXYMETHYL)TETRAHYDRO-3-FURANOL	N - 49
1gpj_A_41	1gpj	A	GLUGLUTAMIC ACID	N - 49
1gpj_A_41	1gpj	A	GLUGLUTAMIC ACID	R - 50
1h1w_A_82	1h1w	A	GOLGLYCEROL	F - 82
1h1w_A_82	1h1w	A	GOLGLYCEROL	K - 83
1h1w_A_82	1h1w	A	GOLGLYCEROL	F - 84
1h1w_A_82	1h1w	A	GOLGLYCEROL	G - 85
1h1w_A_82	1h1w	A	ATPADENOSINE-5'-TRIPHOSPHATE	L - 88
1h1w_A_82	1h1w	A	ATPADENOSINE-5'-TRIPHOSPHATE	G - 89
1h1w_A_82	1h1w	A	ATPADENOSINE-5'-TRIPHOSPHATE	E - 90
1h1w_A_82	1h1w	A	ATPADENOSINE-5'-TRIPHOSPHATE	G - 91
1h1w_A_82	1h1w	A	GOLGLYCEROL	S - 92
1h1w_A_82	1h1w	A	ATPADENOSINE-5'-TRIPHOSPHATE	S - 92
1h1w_A_82	1h1w	A	GOLGLYCEROL	F - 93
1h1w_A_82	1h1w	A	ATPADENOSINE-5'-TRIPHOSPHATE	F - 93
1h1w_A_82	1h1w	A	GOLGLYCEROL	S - 94
1h1w_A_82	1h1w	A	ATPADENOSINE-5'-TRIPHOSPHATE	S - 94
1h1w_A_82	1h1w	A	ATPADENOSINE-5'-TRIPHOSPHATE	T - 95
1h1w_A_82	1h1w	A	ATPADENOSINE-5'-TRIPHOSPHATE	V - 96
1iw7_C_601	1iw7	C	MGMAGNESIUM ION	E - 602
1iw7_C_601	1iw7	C	MGMAGNESIUM ION	V - 603
1iw7_C_601	1iw7	C	MGMAGNESIUM ION	A - 604
1iw7_C_601	1iw7	C	MGMAGNESIUM ION	K - 605
1iw7_C_601	1iw7	C	MGMAGNESIUM ION	R - 614
1jp4_A_38	1jp4	A	PO4PHOSPHATE ION	K - 40
1jp4_A_38	1jp4	A	MGMAGNESIUM ION	K - 40
1jp4_A_38	1jp4	A	AMPADENOSINE MONOPHOSPHATE	T - 41
1jp4_A_38	1jp4	A	AMPADENOSINE MONOPHOSPHATE	T - 44
1jp4_A_38	1jp4	A	PO4PHOSPHATE ION	D - 45
1jp4_A_38	1jp4	A	MGMAGNESIUM ION	D - 45
1jp4_A_38	1jp4	A	AMPADENOSINE MONOPHOSPHATE	D - 45
1jp4_A_38	1jp4	A	PO4PHOSPHATE ION	L - 46
1jp4_A_38	1jp4	A	MGMAGNESIUM ION	L - 46
1k38_A_193	1k38	A	KCXLYSINE NZ-CARBOXYLIC ACID	K - 205
1k38_A_193	1k38	A	FMTFORMIC ACID	K - 205
1k38_A_193	1k38	A	FMTFORMIC ACID	T - 206
1k38_A_193	1k38	A	FMTFORMIC ACID	G - 207
1k38_A_193	1k38	A	FMTFORMIC ACID	W - 208
1mhm_A_75	1mhm	A	PVLPYRUVOYL GROUP	L - 75
1or8_A_329	1or8	A	GOLGLYCEROL	F - 337
1or8_A_329	1or8	A	GOLGLYCEROL	K - 338
1or8_A_329	1or8	A	GOLGLYCEROL	G - 339
1or8_A_329	1or8	A	GOLGLYCEROL	Q - 340

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gpj_A_41	1gpj	A	ACTRECOGNITION AND ACTIVE SITE, HERE OCCUPIED BY THE INHIBITOR GLUTAMYCIN	T - 47
1gpj_A_41	1gpj	A	ACTRECOGNITION AND ACTIVE SITE, HERE OCCUPIED BY THE INHIBITOR GLUTAMYCIN	S - 48
1gpj_A_41	1gpj	A	AC2GLU BINDING SITE FOR CHAIN A	N - 49
1gpj_A_41	1gpj	A	ACTRECOGNITION AND ACTIVE SITE, HERE OCCUPIED BY THE INHIBITOR GLUTAMYCIN	R - 50
1gpj_A_41	1gpj	A	ACTRECOGNITION AND ACTIVE SITE, HERE OCCUPIED BY THE INHIBITOR GLUTAMYCIN	E - 52
1h1w_A_82	1h1w	A	AC4GOL BINDING SITE FOR CHAIN A	F - 82
1h1w_A_82	1h1w	A	AC4GOL BINDING SITE FOR CHAIN A	K - 83
1h1w_A_82	1h1w	A	AC2GOL BINDING SITE FOR CHAIN A	F - 84
1h1w_A_82	1h1w	A	BC6ATP BINDING SITE FOR CHAIN A	G - 89
1h1w_A_82	1h1w	A	BC6ATP BINDING SITE FOR CHAIN A	G - 91
1h1w_A_82	1h1w	A	BC6ATP BINDING SITE FOR CHAIN A	S - 92
1h1w_A_82	1h1w	A	AC8GOL BINDING SITE FOR CHAIN A	S - 94

Clusters included in this Subclass

CLUSTER: HA.1.14

CLUSTER: HA.3.19

CLUSTER: HA.3.51

CLUSTER: HA.5.31

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