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Information on SUBCLASS 2.2.5
Subclass Accession number: 7739
Subclass: 2.2.5 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 9.2 +/- 12.9
Average RMSD (Å) : 0.385 +/- 0.142

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XpppXX
(φψ)-conformation: bbaabb
Pattern: [afgikltv]xx[ADEGNQST][deknprs][dehknrsty]xx[afiklmv]
Conservation:0.037-0.816-1.2621.1731.7110.521-0.916-0.5600.113
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1blx_A_791blx   A8593VSRTDRETKEEE-SSEEEabbbaabbb
1bpy_A_2241bpy   A228236LSKGETKFMEEE-SSEEEabbbaabbb
1c8u_A_741c8u   A8189LRDGNSFSAEEE-SSEEEabbbaabbb
1ciu_*_5371ciu   -539547VSWDDTEVKEEE-SSEEEabbbaabbb
1d3c_A_5411d3c   A542550TSWEDTQIKEEE-SSEEEabbbaabbb
1f1s_A_9131f1s   A916924LENSSKQQVEEE-SSEEEabbbaabbb
1fy7_A_2261fy7   A228236IYRDDYVSFEEE-SSEEEabbbaabbb
1gup_A_2121gup   A213221VVETEHWLAEEE-SSEEEabbbaabbb
1gx3_A_2091gx3   A211219AVVTDDARYEEE-SSEEEbbbxaabbb
1hr6_B_981hr6   B101109AYTSRENTVEEE-SSEEEbbbbaabbb
1ixm_A_1751ixm   A178186FEITSHECLEEE-SSEEEbbxbaabbb
1k4f_A_1931k4f   A194202TEAAPEYLVEEE-SSEEEabbbaabbb
1lwj_A_3931lwj   A397405LCKEDKFLVEEE-SSEEEabbxaabbb
1mbm_A_1001mbm   A104112GLLSGEVCLEEE-SS-EEbxbbaabbb
1o9l_A_4681o9l   A468476RIITEKAVFEEE-SSEEEbbbbaabbb
1obd_A_141obd   A1523VARGKVRDIEEE-SSEEEabbxaabbb
1ovm_A_3041ovm   A305313IEVQPHAAREEE-SSEEEbbbbaabbb
1prz_A_861prz   A8795VYEDEDIIVEEE-SSEEEabbbaabbb
1qho_A_4091qho   A413421RWINNDVYIEEE-SSEEEabbbaabbb
1qho_A_5381qho   A539547KSWTSNRIEEEE-SSEEEabbbaabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1blx_A_791blx   A     CACALCIUM ION L - 79
1blx_A_791blx   A     CACALCIUM ION F - 80
1bpy_A_2241bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE K - 234
1bpy_A_2241bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE M - 236
1k4f_A_1931k4f   A     KCXLYSINE NZ-CARBOXYLIC ACID K - 205
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 16
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE R - 17
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE G - 18
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 19
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 20
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE R - 21
1obd_A_141obd   A     MGMAGNESIUM ION R - 21
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE D - 22
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE I - 23
1prz_A_861prz   A     MSESELENOMETHIONINE Y - 88
1prz_A_861prz   A     MSESELENOMETHIONINE D - 90
1prz_A_861prz   A     MSESELENOMETHIONINE I - 93
1prz_A_861prz   A     MSESELENOMETHIONINE I - 94
1prz_A_861prz   A     MSESELENOMETHIONINE V - 95
1prz_A_861prz   A     MSESELENOMETHIONINE I - 96
1qho_A_4091qho   A     MALMALTOSE Q - 412
1qho_A_4091qho   A     MALMALTOSE R - 413
1qho_A_4091qho   A     MALMALTOSE W - 414
1qho_A_4091qho   A     MALMALTOSE I - 415
1qho_A_4091qho   A     MALMALTOSE N - 416
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obd_A_141obd   A AC2ATP BINDING SITE FOR CHAIN AG - 18
1obd_A_141obd   A AC2ATP BINDING SITE FOR CHAIN AK - 19
1obd_A_141obd   A AC2ATP BINDING SITE FOR CHAIN AR - 21

Clusters included in this Subclass
CLUSTER: HA.2.13
CLUSTER: HA.4.17