ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.3.7

Subclass Accession number: 7780
Subclass: 2.3.7

PSSM

Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 13.0 +/- 17.6
Average RMSD (Å) : 0.460 +/- 0.114

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 135-180

rho (°): 270-315

Consensus Sequence:	XpXpph
(φψ)-conformation:	bbeabp

Pattern:	x	[VWY]	x	[AILV]	x	[eqs]	[ADEG]	[DES]	[knt]	[ilv]
Conservation:	0.033	0.945	-1.834	0.777	-0.758	-0.478	-0.281	1.771	-0.317	0.143

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gen_*_539	1gen	-	539	548	EYWIYSASTL	EEEEEETTEE	bbbbbbeaxx
1ghe_A_62	1ghe	A	64	73	LWVVAEDDNV	EEEEEETTEE	bbbbbbeaxx
1i7q_B_147	1i7q	B	147	156	TVNARFGEMV	EEEEEETTEE	xxabbbeaxx
1jz7_A_254	1jz7	A	257	266	TVSLWQGETQ	EEEEEETTEE	bbbbbbeabx
1mu2_A_337	1mu2	A	338	347	TYKIHQEEKI	EEEEEETTEE	bbbxbbeaxx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ghe_A_62	1ghe	A	MSESELENOMETHIONINE	L - 74
1ghe_A_62	1ghe	A	MSESELENOMETHIONINE	A - 75
1ghe_A_62	1ghe	A	MSESELENOMETHIONINE	S - 76
1ghe_A_62	1ghe	A	MSESELENOMETHIONINE	A - 77
1ghe_A_62	1ghe	A	MSESELENOMETHIONINE	Q - 78
1jz7_A_254	1jz7	A	MGMAGNESIUM ION	T - 257
1jz7_A_254	1jz7	A	DMSDIMETHYL SULFOXIDE	T - 257
1jz7_A_254	1jz7	A	MGMAGNESIUM ION	Q - 266
1jz7_A_254	1jz7	A	DMSDIMETHYL SULFOXIDE	S - 269
1jz7_A_254	1jz7	A	DMSDIMETHYL SULFOXIDE	G - 270
1jz7_A_254	1jz7	A	DMSDIMETHYL SULFOXIDE	T - 271
1jz7_A_254	1jz7	A	DMSDIMETHYL SULFOXIDE	A - 272
1jz7_A_254	1jz7	A	DMSDIMETHYL SULFOXIDE	P - 273

Clusters included in this Subclass

CLUSTER: HA.1.34

CLUSTER: HA.3.147