Logo
Information on SUBCLASS 2.4.2
Subclass Accession number: 7796
Subclass: 2.4.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 31

Average sequence ID (%) : 11.2 +/- 14.4
Average RMSD (Å) : 0.442 +/- 0.213

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXpcXX
(φψ)-conformation: bbllbb
Pattern: xxx[adegknqrs][dgns]xxx
Conservation:-0.227-0.668-0.5830.2662.375-0.393-0.370-0.400
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a7t_A_331a7t   A4249VINNHQAAEEETTEEEbbblvbbb
1ac5_*_4301ac5   -433440KYDRNLTFEEETTEEEbbblvbbb
1aui_A_3191aui   A323330KYENNVMNEEETTEEEbxblvbbx
1b6a_*_2481b6a   -254261THISGRIIEEETTEEEbbblvxxb
1cb8_A_4451cb8   A451458LDYDSLQAEEETTEEExbbllbbb
1e5m_A_3951e5m   A401408FGFGGHNVEETTTEEEbxpgvxbb
1euv_A_4261euv   A428435MNRDNIEIEEETTEEEbbblvbbb
1f8r_A_1201f8r   A121128YFIKNIRKEEETTEEEbbblvbbb
1gz6_A_2361gz6   A238245EVGAGWIGEEETTEEEbbbUgbbb
1hdh_A_4571hdh   A460467WELFGMRAEEETTEEEbbblvxbb
1hkv_A_4201hkv   A423430AVHAGNAREEETTEEEbbblgbbb
1hzo_A_2301hzo   A237244SGDYGTTNEETTTEEEbbxllxbb
1i2s_A_2301i2s   A237244AGSYGTRNEETTTEEEbbxvlxbb
1i7d_A_291i7d   A3138ECGNGQVVEETTTEEExbxvlbbb
1jgt_A_4161jgt   A416422KRRHGRD.HEETTEE.abblvbx.
1k3b_A_671k3b   A7077IVLNDYKWEEETTEEEbbblvbbb
1kas_*_3921kas   -398405FGFGGTNGEETTTEEEbbpvvxbb
1kor_A_3351kor   A340347KLYKGNVYEEETTEEEbbblvbbb
1me8_A_3941me8   A395402VTINGSVMEEETTEEEbxblvbxb
1mh8_A_701mh8   A7178QCTQGTLTEEETTEEEbbblvbbb
1mu5_A_3431mu5   A343350KAYQGHPFEEETTEEEbbblvbwb
1nd4_A_801nd4   A8491VTEAGRDWEE-SS-EEbbblvbxb
1ng4_A_2391ng4   A240247LYHDHCYIEEETTEEExbblvbbb
1o0s_A_4651o0s   A465472FELNGHTYEEETTEEEbbblgpxb
1oan_A_2721oan   A272277.MSSGNL..EETTEE..bxlNbx.
1ows_A_701ows   A7178QCSGGTLTEEETTEEEbbblvxbb
1qcs_A_1351qcs   A138145FSFNDKLFEEETTEEEbxblvbxb
1r0p_A_11441r0p   A11471154LRSEGSPLEETTTEEEbxpvvxxb
1ryp_D_2101ryp   D215222VKPDSDIVEETTTEEEbbxllbbb
1uqu_A_2101uqu   A211218HTAWGKAFEEETTEEEbbblvxxb
4uag_A_3044uag   A307314LEHNGVRWEEETTEEEbbbvvbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a7t_A_331a7t   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID V - 35
1a7t_A_331a7t   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID S - 37
1a7t_A_331a7t   A     ZNZINC ION S - 37
1ac5_*_4301ac5   *     NAGN-ACETYL-D-GLUCOSAMINE Y - 434
1ac5_*_4301ac5   *     NAGN-ACETYL-D-GLUCOSAMINE D - 435
1ac5_*_4301ac5   *     NAGN-ACETYL-D-GLUCOSAMINE R - 436
1ac5_*_4301ac5   *     NAGN-ACETYL-D-GLUCOSAMINE N - 437
1b6a_*_2481b6a   *     TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM D - 251
1b6a_*_2481b6a   *     COCOBALT (II) ION D - 251
1b6a_*_2481b6a   *     COCOBALT (II) ION F - 252
1b6a_*_2481b6a   *     TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM D - 262
1b6a_*_2481b6a   *     COCOBALT (II) ION D - 262
1b6a_*_2481b6a   *     COCOBALT (II) ION C - 263
1b6a_*_2481b6a   *     COCOBALT (II) ION A - 264
1cb8_A_4451cb8   A     MANALPHA-D-MANNOSE D - 454
1cb8_A_4451cb8   A     GCUD-GLUCURONIC ACID D - 454
1cb8_A_4451cb8   A     MANALPHA-D-MANNOSE S - 455
1cb8_A_4451cb8   A     RAMRHAMNOSE S - 455
1cb8_A_4451cb8   A     GCUD-GLUCURONIC ACID S - 455
1cb8_A_4451cb8   A     MANALPHA-D-MANNOSE L - 456
1gz6_A_2361gz6   A     MSESELENOMETHIONINE V - 239
1gz6_A_2361gz6   A     MSESELENOMETHIONINE A - 241
1gz6_A_2361gz6   A     MSESELENOMETHIONINE G - 242
1gz6_A_2361gz6   A     MSESELENOMETHIONINE W - 243
1gz6_A_2361gz6   A     MSESELENOMETHIONINE I - 244
1hzo_A_2301hzo   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID K - 234
1hzo_A_2301hzo   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID T - 235
1hzo_A_2301hzo   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID G - 236
1hzo_A_2301hzo   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID S - 237
1i2s_A_2301i2s   A     CITCITRIC ACID K - 234
1i2s_A_2301i2s   A     CITCITRIC ACID T - 235
1i2s_A_2301i2s   A     CITCITRIC ACID G - 236
1i2s_A_2301i2s   A     CITCITRIC ACID A - 237
1jgt_A_4161jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER D - 422
1me8_A_3941me8   A     RVPRIBAVIRIN MONOPHOSPHATE Y - 405
1me8_A_3941me8   A     RVPRIBAVIRIN MONOPHOSPHATE W - 406
1nd4_A_801nd4   A     ACTACETATE ION G - 95
1ng4_A_2391ng4   A     PEOHYDROGEN PEROXIDE H - 244
1ng4_A_2391ng4   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 246
1ng4_A_2391ng4   A     PEOHYDROGEN PEROXIDE Y - 246
1ows_A_701ows   A     ZNZINC ION Q - 71
1ows_A_701ows   A     ZNZINC ION S - 73
1qcs_A_1351qcs   A     MSESELENOMETHIONINE F - 138
1qcs_A_1351qcs   A     MSESELENOMETHIONINE F - 140
1qcs_A_1351qcs   A     MSESELENOMETHIONINE F - 145
1qcs_A_1351qcs   A     MSESELENOMETHIONINE L - 147
1qcs_A_1351qcs   A     MSESELENOMETHIONINE V - 149
1r0p_A_11441r0p   A     KSAK-252A L - 1157
1r0p_A_11441r0p   A     KSAK-252A P - 1158

Clusters included in this Subclass
CLUSTER: HA.1.9
CLUSTER: HA.2.10
CLUSTER: HA.3.15