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Information on SUBCLASS 2.4.4
Subclass Accession number: 7798
Subclass: 2.4.4 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 13.8 +/- 15.9
Average RMSD (Å) : 0.383 +/- 0.134

Consensus geometry
d (Å): 3 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXXcpX
(φψ)-conformation: bbllbp
Pattern: xx[AGILTV]x[ikltv][egnrs][dgr][ehqrty][lptv]x
Conservation:-0.844-0.9760.740-0.6960.6260.6242.121-0.557-0.812-0.226
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bxo_A_171bxo   A1928TPVTIGGTTLEEEEETTEEEbwbbblvbxb
1fmb_*_101fmb   -1120TIVLINDTPLEEEEETTEEEbxbxblvbwb
1gx3_A_1621gx3   A165174LAAQVRGEWQEEEEETTEEExbbxblvbxb
1ida_A_101ida   A1120VTAYIEGQPVEEEEETTEEEbxbbblvbwb
1k1x_A_1631k1x   A163172YYTEDGGEVIEEEEETTEEEbxbbbvvbbb
1kzk_A_101kzk   A1120VTIRIGGQLKEEEEETTEEEbxbbblvbxb
1lg2_A_531lg2   A5867FAGMTNHQLSEEEEETTEEEwbbbblvbpb
1p0i_A_161p0i   A1625MQLTVFGGTVEEEEETTEEEbxbxblUbbb
1pml_A_621pml   A6372CHVLKNRRLTEEEEETTEEEbxbbbvvbxb
1qmg_A_961qmg   A96105EKVTLSGHDEEEEEETTEEEbbbbblvbxb
2asi_*_872asi   -94103DSIAIGDITVEEEESSS-EEbxbbbllbbb
4fiv_*_154fiv   -1625ILIFVNGYPIEEEEETTEEEbxbxblvbwb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bxo_A_171bxo   A     MANALPHA-D-MANNOSE P - 20
1bxo_A_171bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE N - 31
1bxo_A_171bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE D - 33
1fmb_*_101fmb   *     HYB[2-(2-METHYL-PROPANE-2-SULFONYLMETHYL)-3-NAPHTHALEN-1-YL-PROPIONYL-VALINYL]-PHENYLALANINOL L - 23
1ida_A_101ida   A     HPB2-HYDROXY-3-AMINO-4-PHENYL BUTANE L - 23
1kzk_A_101kzk   A     EGLETHYLENE GLYCOL L - 10
1kzk_A_101kzk   A     EGLETHYLENE GLYCOL R - 14
1kzk_A_101kzk   A     EGLETHYLENE GLYCOL I - 15
1kzk_A_101kzk   A     EGLETHYLENE GLYCOL G - 16
1kzk_A_101kzk   A     EGLETHYLENE GLYCOL G - 17
1kzk_A_101kzk   A     EGLETHYLENE GLYCOL Q - 18
1kzk_A_101kzk   A     EGLETHYLENE GLYCOL K - 20
1kzk_A_101kzk   A     EGLETHYLENE GLYCOL E - 21
1kzk_A_101kzk   A     EGLETHYLENE GLYCOL A - 22
1kzk_A_101kzk   A     JE2(R)-N-(2-METHYLBENZYL)-3-[(2S,3S)-2-HYDROXY-3-(3-HYDROXY-2-METHYLBENZOYL)AMINO-4-PHENYLBUTANOYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXAMIDE L - 23
1kzk_A_101kzk   A     EGLETHYLENE GLYCOL L - 23
1lg2_A_531lg2   A     EDO1,2-ETHANEDIOL F - 58
1p0i_A_161p0i   A     GOLGLYCEROL M - 16
1p0i_A_161p0i   A     GOLGLYCEROL L - 18
1p0i_A_161p0i   A     GOLGLYCEROL A - 27
1p0i_A_161p0i   A     GOLGLYCEROL L - 29
2asi_*_872asi   *     NAGN-ACETYL-D-GLUCOSAMINE N - 88
2asi_*_872asi   *     NAGN-ACETYL-D-GLUCOSAMINE G - 89
2asi_*_872asi   *     NAGN-ACETYL-D-GLUCOSAMINE L - 90
2asi_*_872asi   *     MANALPHA-D-MANNOSE L - 90
2asi_*_872asi   *     NAGN-ACETYL-D-GLUCOSAMINE D - 112
2asi_*_872asi   *     NAGN-ACETYL-D-GLUCOSAMINE N - 113
4fiv_*_154fiv   *     1NI4-[2-(2-ACETYLAMINO-3-NAPHTHALEN-1-YL-PROPIONYLAMINO)-3-METHYL-BUTYRYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL) -PROPYL]-AMIDE L - 28
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bxo_A_171bxo   A CICCATALYTIC RESIDUESD - 33

Clusters included in this Subclass
CLUSTER: HA.1.18
CLUSTER: HA.3.48