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Information on SUBCLASS 2.8.1
Subclass Accession number: 7827
Subclass: 2.8.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 7.4 +/- 10.5
Average RMSD (Å) : 0.467 +/- 0.121

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXpXh
(φψ)-conformation: bbFabb
Pattern: x[GIKLTV][hvy][glt][eht]x[aclp][fkv]x
Conservation:-0.425-1.0771.7920.4681.207-1.149-0.659-0.022-0.135
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bob_*_181bob   -2230SIVGENAVQEEESSSEEEbbbFabxbx
1bu6_O_2601bu6   O263271NTYGTGCFMEEESSSEEEbbbFabbbx
1bu7_A_4331bu7   A433441IKETLTLKPEEESSSEEExxbFabbbx
1j2p_A_1341j2p   A139147AGVNEVPKLEEESSSEEEbebFabxbb
1k6w_A_4121k6w   A413421TVYLEQPEAEEESSSEEEbbbFabxbx
1mo9_A_3891mo9   A390398FLHTHYEVSEEESSSEEEbbbFabxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bu6_O_2601bu6   O     GOLGLYCEROL T - 267
1bu6_O_2601bu6   O     GOLGLYCEROL G - 268
1bu6_O_2601bu6   O     GOLGLYCEROL F - 270
1bu7_A_4331bu7   A     EDO1,2-ETHANEDIOL E - 435
1bu7_A_4331bu7   A     EDO1,2-ETHANEDIOL T - 436
1bu7_A_4331bu7   A     EDO1,2-ETHANEDIOL L - 437
1bu7_A_4331bu7   A     EDO1,2-ETHANEDIOL T - 438
1bu7_A_4331bu7   A     EDO1,2-ETHANEDIOL L - 439
1mo9_A_3891mo9   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 390
1mo9_A_3891mo9   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 392

Clusters included in this Subclass
CLUSTER: HA.2.36