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Information on SUBCLASS 3.2.1
Subclass Accession number: 7833
Subclass: 3.2.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 38

Average sequence ID (%) : 19.1 +/- 18.5
Average RMSD (Å) : 0.339 +/- 0.097

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XpXpXGX
(φψ)-conformation: bbaaaep
Pattern: xx[cdgnst][adegnpst]xx[DGK]xx
Conservation:-1.000-0.4040.038-0.295-0.410-0.5802.219-0.567-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a2v_A_2641a2v   A269277GFNYREGIVEEETTTEEEbbbaaaexb
1aor_A_2961aor   A299307NRLPTVGETEEETTTEEEbbbaaaexb
1bmq_B_3411bmq   B341347.RHPTMGS..EETTTEE..bbaaaep.
1csh_*_561csh   -5765VLDPDEGIREEETTTEEEbbxaaaexb
1d4d_A_2881d4d   A293301VKGEYTGYYEEETTTEEExxxaaaexb
1dfx_*_1101dfx   -113121EYCNLHGHWEEETTTEEEbbbaaaexb
1dqi_A_1031dqi   A109117SYCNIHGLWEEETTTEEEbbxaaaexb
1eth_A_41eth   A410.CFPRLGC..EETTTEE..bbaaaeb.
1f1j_A_2331f1j   A233239.RSPGRGS..EETTTEE..bxaaaex.
1flt_X_1841flt   X185193IWDSRKGFIEEETTTEEEbbbaaaexb
1foh_A_2651foh   A268276IHSAESGSIEE-SSS-EEbbxaaaebb
1g3k_A_1031g3k   A105113IITGIGDVVEEETTTEEEbbbaaaexb
1g8k_A_6471g8k   A647655SWDESKGLVEEETTTEEEbbbaaaexb
1inl_A_471inl   A5159FENPDLGVVEEETTTEEEbbbaaaexb
1iqy_A_2431iqy   A248256GFDVREGVVEEETTTEEExbbaaaexb
1iy9_A_331iy9   A3745VETEEFGNMEEETTTEEEbbxaaaexb
1j09_A_1551j09   A158166VKDELRGVVEEETTTEEEbbbaaaexb
1ksi_A_2431ksi   A248256GFDVRAGIVEEETTTEEEbbbaaaexb
1lbv_A_621lbv   A6472VVTEESGVLEEETTTEEExbbaaaexb
1m15_A_2611m15   A261267.HDDRFGF..EETTTEE..bbaaaex.
1m6i_A_4401m6i   A442450FYDIKLGRREEETTTEEExbxaaaepb
1n16_A_2731n16   A273279.WNEHLGY..EETTTEE..bbaaaex.
1nj4_A_2081nj4   A215223GHTDKAGYNEEETTTEEEbbbaaaexb
1o9l_A_4741o9l   A477485DVDRKKGLTEEETTTEEExbbaaaepb
1oac_A_3281oac   A333341SMNSRVGPMEEETTTEEEbbbaaaewb
1ogs_A_4681ogs   A472480IKDPAVGFLEEETTTEEEbbbaaaebb
1pii_*_571pii   -5763.ASPSKGV..EETTTEE..bbaaaex.
1pyo_B_2311pyo   B231237.RNTKRGS..EETTTEE..bxaaaex.
1qh4_A_2731qh4   A273279.WNPHLGY..EETTTEE..bbaaaex.
1qk1_A_2681qk1   A268274.WNERLGY..EETTTEE..bbaaaex.
1ryp_A_1401ryp   A145153SVDEELGPSEEETTTEEEbbxaaaewb
1ryp_B_1321ryp   B138146GHDEFNGFSEEETTTEEEbbbaaaexb
1ryp_C_1331ryp   C139147GYDDRYGYQEEETTTEEEbbbaaaexb
1ryp_E_1401ryp   E146154GHDADDGYQEEETTTEEEbbbaaaexb
1ryp_E_2171ryp   E221229CITKQDGFKEEETTTEEEbbbaaaexb
1ryp_H_951ryp   H101109GYDDKNKGEEEETTTEEEbbbaaaexb
1ryp_L_981ryp   L103111GYTRKEGPTEEETTTEEEbbbaaaewb
1ukf_A_2221ukf   A225233LFDPNLGEFEEETTTEEEbbbaaaebb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aor_A_2961aor   A     FS4IRON/SULFUR CLUSTER G - 296
1aor_A_2961aor   A     NAWSODIUM ION, 3 WATERS COORDINATED G - 296
1aor_A_2961aor   A     FEFE (III) ION G - 296
1aor_A_2961aor   A     NAWSODIUM ION, 3 WATERS COORDINATED R - 297
1aor_A_2961aor   A     FEFE (III) ION T - 303
1aor_A_2961aor   A     NAWSODIUM ION, 3 WATERS COORDINATED E - 308
1bmq_B_3411bmq   B     MNO(3S)-N-METHANESULFONYL-3-({1-[N-(2-NAPHTOYL)-L-VALYL]-L-PROLYL}AMINO)-4-OXOBUTANAMIDE R - 341
1bmq_B_3411bmq   B     MNO(3S)-N-METHANESULFONYL-3-({1-[N-(2-NAPHTOYL)-L-VALYL]-L-PROLYL}AMINO)-4-OXOBUTANAMIDE H - 342
1bmq_B_3411bmq   B     MNO(3S)-N-METHANESULFONYL-3-({1-[N-(2-NAPHTOYL)-L-VALYL]-L-PROLYL}AMINO)-4-OXOBUTANAMIDE P - 343
1bmq_B_3411bmq   B     MNO(3S)-N-METHANESULFONYL-3-({1-[N-(2-NAPHTOYL)-L-VALYL]-L-PROLYL}AMINO)-4-OXOBUTANAMIDE M - 345
1bmq_B_3411bmq   B     MNO(3S)-N-METHANESULFONYL-3-({1-[N-(2-NAPHTOYL)-L-VALYL]-L-PROLYL}AMINO)-4-OXOBUTANAMIDE S - 347
1csh_*_561csh   *     OAAOXALOACETATE ION L - 58
1d4d_A_2881d4d   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 296
1d4d_A_2881d4d   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 297
1dfx_*_1101dfx   *     FEFE (III) ION C - 115
1dfx_*_1101dfx   *     FEFE (III) ION N - 116
1dfx_*_1101dfx   *     FEFE (III) ION L - 117
1dfx_*_1101dfx   *     FEFE (III) ION H - 118
1dqi_A_1031dqi   A     FEFE (III) ION C - 111
1dqi_A_1031dqi   A     FEFE (III) ION N - 112
1dqi_A_1031dqi   A     FEFE (III) ION I - 113
1dqi_A_1031dqi   A     FEFE (III) ION H - 114
1eth_A_41eth   A     BMABETA-D-MANNOSE C - 10
1foh_A_2651foh   A     IPHPHENOL R - 265
1foh_A_2651foh   A     IPHPHENOL M - 277
1foh_A_2651foh   A     IPHPHENOL I - 279
1o9l_A_4741o9l   A     EMCETHYL MERCURY ION R - 480
1pii_*_571pii   *     PO4PHOSPHATE ION K - 61
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ogs_A_4681ogs   A AC8SO4 BINDING SITE FOR CHAIN AK - 473

Clusters included in this Subclass
CLUSTER: HA.4.6