ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.2.1

Subclass Accession number: 7833
Subclass: 3.2.1

Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 38

Average sequence ID (%) : 19.1 +/- 18.5
Average RMSD (Å) : 0.339 +/- 0.097

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XpXpXGX
(φψ)-conformation:	bbaaaep

Pattern:	x	x	[cdgnst]	[adegnpst]	x	x	[DGK]	x	x
Conservation:	-1.000	-0.404	0.038	-0.295	-0.410	-0.580	2.219	-0.567	-1.000

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a2v_A_264	1a2v	A	269	277	GFNYREGIV	EEETTTEEE	bbbaaaexb
1aor_A_296	1aor	A	299	307	NRLPTVGET	EEETTTEEE	bbbaaaexb
1bmq_B_341	1bmq	B	341	347	.RHPTMGS.	.EETTTEE.	.bbaaaep.
1csh_*_56	1csh	-	57	65	VLDPDEGIR	EEETTTEEE	bbxaaaexb
1d4d_A_288	1d4d	A	293	301	VKGEYTGYY	EEETTTEEE	xxxaaaexb
1dfx_*_110	1dfx	-	113	121	EYCNLHGHW	EEETTTEEE	bbbaaaexb
1dqi_A_103	1dqi	A	109	117	SYCNIHGLW	EEETTTEEE	bbxaaaexb
1eth_A_4	1eth	A	4	10	.CFPRLGC.	.EETTTEE.	.bbaaaeb.
1f1j_A_233	1f1j	A	233	239	.RSPGRGS.	.EETTTEE.	.bxaaaex.
1flt_X_184	1flt	X	185	193	IWDSRKGFI	EEETTTEEE	bbbaaaexb
1foh_A_265	1foh	A	268	276	IHSAESGSI	EE-SSS-EE	bbxaaaebb
1g3k_A_103	1g3k	A	105	113	IITGIGDVV	EEETTTEEE	bbbaaaexb
1g8k_A_647	1g8k	A	647	655	SWDESKGLV	EEETTTEEE	bbbaaaexb
1inl_A_47	1inl	A	51	59	FENPDLGVV	EEETTTEEE	bbbaaaexb
1iqy_A_243	1iqy	A	248	256	GFDVREGVV	EEETTTEEE	xbbaaaexb
1iy9_A_33	1iy9	A	37	45	VETEEFGNM	EEETTTEEE	bbxaaaexb
1j09_A_155	1j09	A	158	166	VKDELRGVV	EEETTTEEE	bbbaaaexb
1ksi_A_243	1ksi	A	248	256	GFDVRAGIV	EEETTTEEE	bbbaaaexb
1lbv_A_62	1lbv	A	64	72	VVTEESGVL	EEETTTEEE	xbbaaaexb
1m15_A_261	1m15	A	261	267	.HDDRFGF.	.EETTTEE.	.bbaaaex.
1m6i_A_440	1m6i	A	442	450	FYDIKLGRR	EEETTTEEE	xbxaaaepb
1n16_A_273	1n16	A	273	279	.WNEHLGY.	.EETTTEE.	.bbaaaex.
1nj4_A_208	1nj4	A	215	223	GHTDKAGYN	EEETTTEEE	bbbaaaexb
1o9l_A_474	1o9l	A	477	485	DVDRKKGLT	EEETTTEEE	xbbaaaepb
1oac_A_328	1oac	A	333	341	SMNSRVGPM	EEETTTEEE	bbbaaaewb
1ogs_A_468	1ogs	A	472	480	IKDPAVGFL	EEETTTEEE	bbbaaaebb
1pii_*_57	1pii	-	57	63	.ASPSKGV.	.EETTTEE.	.bbaaaex.
1pyo_B_231	1pyo	B	231	237	.RNTKRGS.	.EETTTEE.	.bxaaaex.
1qh4_A_273	1qh4	A	273	279	.WNPHLGY.	.EETTTEE.	.bbaaaex.
1qk1_A_268	1qk1	A	268	274	.WNERLGY.	.EETTTEE.	.bbaaaex.
1ryp_A_140	1ryp	A	145	153	SVDEELGPS	EEETTTEEE	bbxaaaewb
1ryp_B_132	1ryp	B	138	146	GHDEFNGFS	EEETTTEEE	bbbaaaexb
1ryp_C_133	1ryp	C	139	147	GYDDRYGYQ	EEETTTEEE	bbbaaaexb
1ryp_E_140	1ryp	E	146	154	GHDADDGYQ	EEETTTEEE	bbbaaaexb
1ryp_E_217	1ryp	E	221	229	CITKQDGFK	EEETTTEEE	bbbaaaexb
1ryp_H_95	1ryp	H	101	109	GYDDKNKGE	EEETTTEEE	bbbaaaexb
1ryp_L_98	1ryp	L	103	111	GYTRKEGPT	EEETTTEEE	bbbaaaewb
1ukf_A_222	1ukf	A	225	233	LFDPNLGEF	EEETTTEEE	bbbaaaebb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aor_A_296	1aor	A	FS4IRON/SULFUR CLUSTER	G - 296
1aor_A_296	1aor	A	NAWSODIUM ION, 3 WATERS COORDINATED	G - 296
1aor_A_296	1aor	A	FEFE (III) ION	G - 296
1aor_A_296	1aor	A	NAWSODIUM ION, 3 WATERS COORDINATED	R - 297
1aor_A_296	1aor	A	FEFE (III) ION	T - 303
1aor_A_296	1aor	A	NAWSODIUM ION, 3 WATERS COORDINATED	E - 308
1bmq_B_341	1bmq	B	MNO(3S)-N-METHANESULFONYL-3-({1-[N-(2-NAPHTOYL)-L-VALYL]-L-PROLYL}AMINO)-4-OXOBUTANAMIDE	R - 341
1bmq_B_341	1bmq	B	MNO(3S)-N-METHANESULFONYL-3-({1-[N-(2-NAPHTOYL)-L-VALYL]-L-PROLYL}AMINO)-4-OXOBUTANAMIDE	H - 342
1bmq_B_341	1bmq	B	MNO(3S)-N-METHANESULFONYL-3-({1-[N-(2-NAPHTOYL)-L-VALYL]-L-PROLYL}AMINO)-4-OXOBUTANAMIDE	P - 343
1bmq_B_341	1bmq	B	MNO(3S)-N-METHANESULFONYL-3-({1-[N-(2-NAPHTOYL)-L-VALYL]-L-PROLYL}AMINO)-4-OXOBUTANAMIDE	M - 345
1bmq_B_341	1bmq	B	MNO(3S)-N-METHANESULFONYL-3-({1-[N-(2-NAPHTOYL)-L-VALYL]-L-PROLYL}AMINO)-4-OXOBUTANAMIDE	S - 347
1csh_*_56	1csh	*	OAAOXALOACETATE ION	L - 58
1d4d_A_288	1d4d	A	HEMPROTOPORPHYRIN IX CONTAINING FE	E - 296
1d4d_A_288	1d4d	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 297
1dfx_*_110	1dfx	*	FEFE (III) ION	C - 115
1dfx_*_110	1dfx	*	FEFE (III) ION	N - 116
1dfx_*_110	1dfx	*	FEFE (III) ION	L - 117
1dfx_*_110	1dfx	*	FEFE (III) ION	H - 118
1dqi_A_103	1dqi	A	FEFE (III) ION	C - 111
1dqi_A_103	1dqi	A	FEFE (III) ION	N - 112
1dqi_A_103	1dqi	A	FEFE (III) ION	I - 113
1dqi_A_103	1dqi	A	FEFE (III) ION	H - 114
1eth_A_4	1eth	A	BMABETA-D-MANNOSE	C - 10
1foh_A_265	1foh	A	IPHPHENOL	R - 265
1foh_A_265	1foh	A	IPHPHENOL	M - 277
1foh_A_265	1foh	A	IPHPHENOL	I - 279
1o9l_A_474	1o9l	A	EMCETHYL MERCURY ION	R - 480
1pii_*_57	1pii	*	PO4PHOSPHATE ION	K - 61

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1ogs_A_468	1ogs	A	AC8SO4 BINDING SITE FOR CHAIN A	K - 473

Clusters included in this Subclass

CLUSTER: HA.4.6