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Information on SUBCLASS 4.1.8
Subclass Accession number: 7873
Subclass: 4.1.8 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 14.6 +/- 18.9
Average RMSD (Å) : 0.463 +/- 0.400

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hXXpppXX
(φψ)-conformation: bbaaalbb
Pattern: x[AILY]x[ekpr][ADEKT][nrst][DEGKNQR]x[fikl][flmvy][AKLMT]
Conservation:-0.6892.0100.402-0.0881.270-0.3390.329-1.653-0.795-0.132-0.314
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dp4_A_3881dp4   A393403NYNGTSQELMAEE-TTT--EEEbbxaaavxbbx
1e9g_A_351e9g   A3545YADKENNIFNMEEETTTTEEEExabaaalbbxx
1g72_A_3921g72   A392402SYDPESRTLYAEEETTTTEEEEbbbaaalbbbx
1h4i_A_3991h4i   A399409SYDPKRELFFMEEETTTTEEEEbbxaaalbxbb
1l8k_A_1341l8k   A134144MLFKETGFSVKEEETTTTEEEExbbaaavbbbb
1lrw_A_3991lrw   A399409SYDPERKVFMLEEETTTTEEEEbbxaaalbbxx
1pa1_A_6331pa1   A633643MIFEDTNLKLTEEETTTTEEEEbbbaaalbbbb
2bbk_H_2722bbk   H273283AYHRALDRIYLEEETTTTEEEEbbxaaalbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dp4_A_3881dp4   A     NAGN-ACETYL-D-GLUCOSAMINE N - 395
1dp4_A_3881dp4   A     NAGN-ACETYL-D-GLUCOSAMINE G - 396
1dp4_A_3881dp4   A     NAGN-ACETYL-D-GLUCOSAMINE T - 397
1dp4_A_3881dp4   A     NAGN-ACETYL-D-GLUCOSAMINE S - 398
1dp4_A_3881dp4   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 399
1dp4_A_3881dp4   A     NAGN-ACETYL-D-GLUCOSAMINE E - 400
1e9g_A_351e9g   A     MNMANGANESE (II) ION E - 48
1e9g_A_351e9g   A     PO4PHOSPHATE ION E - 48
1pa1_A_6331pa1   A     MGMAGNESIUM ION K - 641
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e9g_A_351e9g   A ASAACTIVE SITE A.E - 48

Clusters included in this Subclass
CLUSTER: HA.5.35