Information on SUBCLASS 4.1.18 |
Subclass Accession number: 7883
Subclass: 4.1.18 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 2 Average sequence ID (%) : 0.0 +/- 0.0 Average RMSD (Å) : 1.300 +/- 0.000 Consensus geometry
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Consensus Sequence: | XXXXpXXX |
(φψ)-conformation: | bpaaalbp |
Pattern: | [SV] | x | x | x | [GT] | [EL] | [LT] | [CS] | [TV] | [CD] | x | [SV] | [EH] | [FK] | [KV] | [FT] | [AI] | x | [GV] | [KL] | [AF] | [DT] | [AV] | [AV] | [VY] |
Conservation: | -0.939 | -1.323 | -0.169 | -0.939 | 0.215 | -1.323 | 0.215 | 1.754 | 0.985 | 0.985 | -1.323 | -0.939 | 2.524 | -0.554 | -0.554 | 0.215 | -0.169 | -0.169 | -0.939 | -0.554 | -0.169 | 0.985 | 0.600 | 0.600 | 0.985 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a8r_A_99 | 1a8r | A | 101 | 125 | VRDITLTSTCESHFVTIDGKATVAY | EEEEEEEEEETTTTEEEEEEEEEEE | bblxxbbbbxaaalbpbbbbbbbbb |
1ckm_A_126 | 1ckm | A | 126 | 150 | SIFDGELCVDIVEKKFAFVLFDAVV | EEEEEEEEEETTTTEEEEEEEEEEE | bbbbbbxbbxaaalbxbbbxabbab |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1a8r_A_99 | 1a8r | A | GTPGUANOSINE-5'-TRIPHOSPHATE | C - 110 |
1a8r_A_99 | 1a8r | A | GTPGUANOSINE-5'-TRIPHOSPHATE | E - 111 |
1a8r_A_99 | 1a8r | A | GTPGUANOSINE-5'-TRIPHOSPHATE | S - 112 |
1a8r_A_99 | 1a8r | A | GTPGUANOSINE-5'-TRIPHOSPHATE | H - 113 |
1a8r_A_99 | 1a8r | A | GTPGUANOSINE-5'-TRIPHOSPHATE | I - 117 |
1a8r_A_99 | 1a8r | A | GTPGUANOSINE-5'-TRIPHOSPHATE | Y - 125 |
1ckm_A_126 | 1ckm | A | GTPGUANOSINE-5'-TRIPHOSPHATE | D - 129 |
1ckm_A_126 | 1ckm | A | GTPGUANOSINE-5'-TRIPHOSPHATE | G - 130 |
1ckm_A_126 | 1ckm | A | GTPGUANOSINE-5'-TRIPHOSPHATE | E - 131 |
1ckm_A_126 | 1ckm | A | GTPGUANOSINE-5'-TRIPHOSPHATE | F - 146 |
Clusters included in this Subclass |
CLUSTER: HA.4.45 |